Non-Coding RNA Search

Ss1.1-Pig1-118A10.5

Sequence:


               
               TTTTTTTTTTTTTAATTAAAAACAAAACTTTGACCTGTAGTTTCCTTTTTTTTTTTTTTT
TAAAGAAAGACACCCTCCTAAAGCCATGTTTCTTCCAACAAATGTTGGGAACGTGTTAAG
CAAGTGAAAACTGCTTATAGCTAGAGGAGCCCTCTAACTTGGGAGGGTCAATTTTAAAAG
CCTTAAGGGTGAGATTTCTGAACCCCATTTAGTTGTGGTTTTCAGCTTTAAAATTGTCTG
GGGTTTTATTTTTCTTTTCAAAATATTTAATAGACATAGCAGTCAGCCTAGAACAAACCT
TTGGCCCATTATATAGCTTTAGTGAGGGAAGTGGCTTTTATTTCTTGCTTCTTTAGGTTT
TTGTTGGTACATAAGCAAAAACAAAATTTCTGCCTAGGGCTAAAAGTGCTACTTGAACCT
AGAAAGGCACGTCATCCCTATTGTGGTTTTTAGGGACACTTATCTTTCCCAGAGACAAGA
GGCTCAATTCAGGACAGAGGAGGAGCTCTGCAGAAAACCTACACACACTTGATCAGGTTC
CTTCCTTTCTTCCATCAGAGATGTTAGTAGTATTTTAAAGCAGTGTGAGCATCATGCTTC
CAAAGTCAAGAGGTCGTCTCCTAAAGAAAGAGCCTGTTTACTTTCACTATCTGAATATTC
CAGCTGGTGGAAATACATGAGCTTTGTTGTGTTCCTGGTCTTCCAATAGCCTGTCATTAT
TGTTAGCTGTTATGCACCCGTTGTTGAGTGTGGGTTCCCTTATAGCCCTAATCTAGATGA
TCTCAGACAGGGTGAGACACATGCAAGCCGCTGGTATGTGCACAAGCAGTTGCAATGAAT
CATTCCTCAGGCTGAGATGGCAGTGGCCATCTATCTTTCTGTTCATTCATTAAATAAACA
TTTATAAGTACCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTAATTAAAAACAAAACTTTGACCTGTAGTTTCCTTTTTTTTTTTTTTT
TAAAGAAAGACACCCTCCTAAAGCCATGTTTCTTCCAACAAATGTTGGGAACGTGTTAAG
CAAGTGAAAACTGCTTATAGCTAGAGGAGCCCTCTAACTTGGGAGGGTCAATTTTAAAAG
CCTTAAGGGTGAGATTTCTGAACCCCATTTAGTTGTGGTTTTCAGCTTTAAAATTGTCTG
GGGTTTTATTTTTCTTTTCAAAATATTTAATAGACATAGCAGTCAGCCTAGAACAAACCT
TTGGCCCATTATATAGCTTTAGTGAGGGAAGTGGCTTTTATTTCTTGCTTCTTTAGGTTT
TTGTTGGTACATAAGCAAAAACAAAATTTCTGCCTAGGGCTAAAAGTGCTACTTGAACCT
AGAAAGGCACGTCATCCCTATTGTGGTTTTTAGGGACACTTATCTTTCCCAGAGACAAGA
GGCTCAATTCAGGACAGAGGAGGAGCTCTGCAGAAAACCTACACACACTTGATCAGGTTC
CTTCCTTTCTTCCATCAGAGATGTTAGTAGTATTTTAAAGCAGTGTGAGCATCATGCTTC
CAAAGTCAAGAGGTCGTCTCCTAAAGAAAGAGCCTGTTTACTTTCACTATCTGAATATTC
CAGCTGGTGGAAATACATGAGCTTTGTTGTGTTCCTGGTCTTCCAATAGCCTGTCATTAT
TGTTAGCTGTTATGCACCCGTTGTTGAGTGTGGGTTCCCTTATAGCCCTAATCTAGATGA
TCTCAGACAGGGTGAGACACATGCAAGCCGCTGGTATGTGCACAAGCAGTTGCAATGAAT
CATTCCTCAGGCTGAGATGGCAGTGGCCATCTATCTTTCTGTTCATTCATTAAATAAACA
TTTATAAGTACCAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               144-257, + strand, RNAz p=0.971392

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-257, + strand, RNAz p=0.971392

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               126-909, gnl|bosTau2|chr2 (76872764-76873540)
               

               
               126-909, gnl|Hg17|chr1 (28864266-28865332)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-909, gnl|bosTau2|chr2 (76872764-76873540)
               

               
               126-909, gnl|Hg17|chr1 (28864266-28865332)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cmu (0.186393)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

	126-909, gnl\|bosTau2\|chr2 (76872764-76873540)
	126-909, gnl\|Hg17\|chr1 (28864266-28865332)

	cmu (0.186393)
	nje (0.16592)
	spl (0.143184)
	lnt (0.142308)
	med (0.116252)