Ss1.1-Pig1-118B08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGACAGTGGAGAAGAAGAAGAAAGGGCGGCCTCGGAAGGACTCCCGGCTCATGCCCATG TCCCTATCCATGCAGTCCCCCGCCGCCCTGACTGCAGAGAAGGATGCCATGTGTTTGTCT GTCCCAGCACCTGCACTGAAGCTGCCCATGCCGGGTCCCCAGAGAGCGTTCACCCTCCAG GTGAGCTCCGACCCCTCCATGTACATCGAGGTGGAGAATGAGGTGACGACTGTGGGGGGC ACAAAGCTGAGCCGCTTGAAGTGTAGCCGGGAAGGGAAGGAGTGGGAGACGGTGCTCACT GGCCGGATCCTCACCGCTGCCGGCAGCTGTGATGTGGTGTGTGTCGCCTGTGAAAAGAGG CTGCTGTCAGTCTTCTCCACCTGTGGGCGCCGCCTCCTCCCTCCCATCCTCCTGCCGTCC CCGATCTCCACTTTGCACTGCACCGGCTCCTACGTCATGGCCCTCACCGCTGCGGCCACG CTGTCTGTCTGGGACGTTCACAGACAGGTGGTGGTGGTCAAGGAAGAGCCTCTCCACTCC ATCCTGGCAGGAAGTGACATGACAGTTTCACAGATCTTGTTGACACAGCATGGAATCCCC GTGATGAACCTGTCTGATGGGAAGGCCTACTGCTTTAACCCATCACTGTCTACATGGAAC CTGGTTTCTGACAAGCAGGACTCCTTGGCCCAGTGCGCAGACTTCAGGAGCAGTCTGCCT CCCCAGGACGCCATGCTGTGCTCAGGGCCCTTAGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGACAGTGGAGAAGAAGAAGAAAGGGCGGCCTCGGAAGGACTCCCGGCTCATGCCCATG TCCCTATCCATGCAGTCCCCCGCCGCCCTGACTGCAGAGAAGGATGCCATGTGTTTGTCT GTCCCAGCACCTGCACTGAAGCTGCCCATGCCGGGTCCCCAGAGAGCGTTCACCCTCCAG GTGAGCTCCGACCCCTCCATGTACATCGAGGTGGAGAATGAGGTGACGACTGTGGGGGGC ACAAAGCTGAGCCGCTTGAAGTGTAGCCGGGAAGGGAAGGAGTGGGAGACGGTGCTCACT GGCCGGATCCTCACCGCTGCCGGCAGCTGTGATGTGGTGTGTGTCGCCTGTGAAAAGAGG CTGCTGTCAGTCTTCTCCACCTGTGGGCGCCGCCTCCTCCCTCCCATCCTCCTGCCGTCC CCGATCTCCACTTTGCACTGCACCGGCTCCTACGTCATGGCCCTCACCGCTGCGGCCACG CTGTCTGTCTGGGACGTTCACAGACAGGTGGTGGTGGTCAAGGAAGAGCCTCTCCACTCC ATCCTGGCAGGAAGTGACATGACAGTTTCACAGATCTTGTTGACACAGCATGGAATCCCC GTGATGAACCTGTCTGATGGGAAGGCCTACTGCTTTAACCCATCACTGTCTACATGGAAC CTGGTTTCTGACAAGCAGGACTCCTTGGCCCAGTGCGCAGACTTCAGGAGCAGTCTGCCT CCCCAGGACGCCATGCTGTGCTCAGGGCCCTTAGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 71-187, gnl|bosTau2|chr17 (43820796-43820680) | |
| 71-187, gnl|canFam2|chr26 (32911570-32911434) | |
| 71-187, gnl|dasNov1|scaffold_12624 (1274-1414) | |
| 71-187, gnl|echTel1|scaffold_291682 (82133-82272) | |
| 71-187, gnl|galGal2|chr15 (623901-624029) | |
| 71-187, gnl|hg17|chr22 (17723302-17723442) | |
| 71-187, gnl|Hg17|chr22 (17723423-17723307) | |
| 71-187, gnl|loxAfr1|scaffold_24554 (16177-16317) | |
| 71-187, gnl|mm7|chr16 (18497265-18497125) | |
| 71-187, gnl|Mm7|chr16_random (3092821-3092707) | |
| 71-187, gnl|monDom2|scaffold_141 (1955215-1955365) | |
| 71-187, gnl|oryCun1|scaffold_161971 (16341-16481) | |
| 71-187, gnl|panTro1|chr23 (17697392-17697532) | |
| 71-187, gnl|rheMac2|chr10 (63403406-63403546) | |
| 71-187, gnl|rn3|chr11_random (1059523-1059662) | |
| 71-187, gnl|xenTro1|scaffold_118 (345995-346136) | |
| 314-551, gnl|bosTau2|chr17 (43818548-43818311) | |
| 314-551, gnl|Hg17|chr22 (17719151-17718306) | |
| 314-551, gnl|Mm7|chr16_random (3089078-3088514) | |
| 647-756, gnl|bosTau2|chr17 (43817911-43817803) | |
| 647-756, gnl|canFam2|chr26 (32917026-32916857) | |
| 647-756, gnl|danRer3|chr7 (25501067-25500938) | |
| 647-756, gnl|dasNov1|scaffold_4450 (3716-3884) | |
| 647-756, gnl|echTel1|scaffold_291682 (76849-77016) | |
| 647-756, gnl|fr1|chrUn (61062559-61062709) | |
| 647-756, gnl|galGal2|chr15 (618919-619069) | |
| 647-756, gnl|hg17|chr22 (17716069-17716238) | |
| 647-756, gnl|Hg17|chr22 (17716204-17716096) | |
| 647-756, gnl|mm7|chr16 (18503856-18503688) | |
| 647-756, gnl|Mm7|chr16_random (3086244-3086136) | |
| 647-756, gnl|monDom2|scaffold_141 (1949056-1949226) | |
| 647-756, gnl|oryCun1|scaffold_161971 (11137-11306) | |
| 647-756, gnl|panTro1|chr23 (17689994-17690163) | |
| 647-756, gnl|rheMac2|chr10 (63396191-63396360) | |
| 647-756, gnl|rn3|chr11_random (1053181-1053349) | |
| 647-756, gnl|tetNig1|chr12 (10226497-10226369) | |
| 647-756, gnl|xenTro1|scaffold_118 (339098-339261) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-187, gnl|bosTau2|chr17 (43820796-43820680) | |
| 71-187, gnl|canFam2|chr26 (32911570-32911434) | |
| 71-187, gnl|dasNov1|scaffold_12624 (1274-1414) | |
| 71-187, gnl|echTel1|scaffold_291682 (82133-82272) | |
| 71-187, gnl|galGal2|chr15 (623901-624029) | |
| 71-187, gnl|hg17|chr22 (17723302-17723442) | |
| 71-187, gnl|Hg17|chr22 (17723423-17723307) | |
| 71-187, gnl|loxAfr1|scaffold_24554 (16177-16317) | |
| 71-187, gnl|mm7|chr16 (18497265-18497125) | |
| 71-187, gnl|Mm7|chr16_random (3092821-3092707) | |
| 71-187, gnl|monDom2|scaffold_141 (1955215-1955365) | |
| 71-187, gnl|oryCun1|scaffold_161971 (16341-16481) | |
| 71-187, gnl|panTro1|chr23 (17697392-17697532) | |
| 71-187, gnl|rheMac2|chr10 (63403406-63403546) | |
| 71-187, gnl|rn3|chr11_random (1059523-1059662) | |
| 71-187, gnl|xenTro1|scaffold_118 (345995-346136) | |
| 314-551, gnl|bosTau2|chr17 (43818548-43818311) | |
| 314-551, gnl|Hg17|chr22 (17719151-17718306) | |
| 314-551, gnl|Mm7|chr16_random (3089078-3088514) | |
| 647-756, gnl|bosTau2|chr17 (43817911-43817803) | |
| 647-756, gnl|canFam2|chr26 (32917026-32916857) | |
| 647-756, gnl|danRer3|chr7 (25501067-25500938) | |
| 647-756, gnl|dasNov1|scaffold_4450 (3716-3884) | |
| 647-756, gnl|echTel1|scaffold_291682 (76849-77016) | |
| 647-756, gnl|fr1|chrUn (61062559-61062709) | |
| 647-756, gnl|galGal2|chr15 (618919-619069) | |
| 647-756, gnl|hg17|chr22 (17716069-17716238) | |
| 647-756, gnl|Hg17|chr22 (17716204-17716096) | |
| 647-756, gnl|mm7|chr16 (18503856-18503688) | |
| 647-756, gnl|Mm7|chr16_random (3086244-3086136) | |
| 647-756, gnl|monDom2|scaffold_141 (1949056-1949226) | |
| 647-756, gnl|oryCun1|scaffold_161971 (11137-11306) | |
| 647-756, gnl|panTro1|chr23 (17689994-17690163) | |
| 647-756, gnl|rheMac2|chr10 (63396191-63396360) | |
| 647-756, gnl|rn3|chr11_random (1053181-1053349) | |
| 647-756, gnl|tetNig1|chr12 (10226497-10226369) | |
| 647-756, gnl|xenTro1|scaffold_118 (339098-339261) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| nje (0.16592) | |
| ctl (0.153069) |