Non-Coding RNA Search

Ss1.1-Pig1-118G07.5

Sequence:


               
               AAGAATATTGAAAGACACAGCAATAAAGTCTGCAGATAATCAGGTTCCTCCACCAGTCAG
TGCAGCTCTTCAAGGGATCAAAAGTATTGTGACACTTTCAATGGCCAAAACCGAGGAAAC
TCAGAAACAGTGGACAGCTCTAATTCGTAGTACTCTTGCATGCATCCTAGAATATTCTCA
ACCAGAAGATTCTATGCCTATGCCTGATGAAGTAAGCATGCTAACAGCAATTGCACTCTT
CCTGTGGTCTGCTGGAAGTGAAATAATAGGAGTCCAGTCACTGCAGAATGGCTGCATGAA
TAGATTTAAAAATGCATTAAATTCATGTGATCCATGGGTTCAAGCCAAATGTTACCAGCT
TCTCCTCTCGGTCTTTCAACATTCCAACCGTGCCCTTTCAACTCCCTATATCCATACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAATATTGAAAGACACAGCAATAAAGTCTGCAGATAATCAGGTTCCTCCACCAGTCAG
TGCAGCTCTTCAAGGGATCAAAAGTATTGTGACACTTTCAATGGCCAAAACCGAGGAAAC
TCAGAAACAGTGGACAGCTCTAATTCGTAGTACTCTTGCATGCATCCTAGAATATTCTCA
ACCAGAAGATTCTATGCCTATGCCTGATGAAGTAAGCATGCTAACAGCAATTGCACTCTT
CCTGTGGTCTGCTGGAAGTGAAATAATAGGAGTCCAGTCACTGCAGAATGGCTGCATGAA
TAGATTTAAAAATGCATTAAATTCATGTGATCCATGGGTTCAAGCCAAATGTTACCAGCT
TCTCCTCTCGGTCTTTCAACATTCCAACCGTGCCCTTTCAACTCCCTATATCCATACATT

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-185, gnl|bosTau2|chr11 (15108226-15108042)
               

               
               1-185, gnl|canFam2|chr17 (32494124-32494373)
               

               
               1-185, gnl|danRer3|chrNA (101691557-101691785)
               

               
               1-185, gnl|dasNov1|scaffold_819 (51498-51747)
               

               
               1-185, gnl|echTel1|scaffold_255703 (805-1054)
               

               
               1-185, gnl|fr1|chrUn (15204269-15204509)
               

               
               1-185, gnl|galGal2|chr3 (28363581-28363334)
               

               
               1-185, gnl|hg17|chr2 (37139377-37139629)
               

               
               1-185, gnl|Hg17|chr2 (37139567-37139380)
               

               
               1-185, gnl|loxAfr1|scaffold_55203 (5577-5826)
               

               
               1-185, gnl|mm7|chr17 (77060967-77061216)
               

               
               1-185, gnl|Mm7|chr17 (77061154-77060970)
               

               
               1-185, gnl|monDom2|scaffold_1 (134961280-134961033)
               

               
               1-185, gnl|oryCun1|scaffold_156023 (10162-10411)
               

               
               1-185, gnl|panTro1|chr12 (38591044-38591296)
               

               
               1-185, gnl|rheMac2|chr13 (36982598-36982850)
               

               
               1-185, gnl|rn3|chr6 (1547648-1547895)
               

               
               1-185, gnl|tetNig1|chr17 (2144979-2144748)
               

               
               1-185, gnl|xenTro1|scaffold_581 (53053-52809)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-185, gnl|bosTau2|chr11 (15108226-15108042)
               

               
               1-185, gnl|canFam2|chr17 (32494124-32494373)
               

               
               1-185, gnl|danRer3|chrNA (101691557-101691785)
               

               
               1-185, gnl|dasNov1|scaffold_819 (51498-51747)
               

               
               1-185, gnl|echTel1|scaffold_255703 (805-1054)
               

               
               1-185, gnl|fr1|chrUn (15204269-15204509)
               

               
               1-185, gnl|galGal2|chr3 (28363581-28363334)
               

               
               1-185, gnl|hg17|chr2 (37139377-37139629)
               

               
               1-185, gnl|Hg17|chr2 (37139567-37139380)
               

               
               1-185, gnl|loxAfr1|scaffold_55203 (5577-5826)
               

               
               1-185, gnl|mm7|chr17 (77060967-77061216)
               

               
               1-185, gnl|Mm7|chr17 (77061154-77060970)
               

               
               1-185, gnl|monDom2|scaffold_1 (134961280-134961033)
               

               
               1-185, gnl|oryCun1|scaffold_156023 (10162-10411)
               

               
               1-185, gnl|panTro1|chr12 (38591044-38591296)
               

               
               1-185, gnl|rheMac2|chr13 (36982598-36982850)
               

               
               1-185, gnl|rn3|chr6 (1547648-1547895)
               

               
               1-185, gnl|tetNig1|chr17 (2144979-2144748)
               

               
               1-185, gnl|xenTro1|scaffold_581 (53053-52809)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spl (0.143184)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-185, gnl\|bosTau2\|chr11 (15108226-15108042)
	1-185, gnl\|canFam2\|chr17 (32494124-32494373)
	1-185, gnl\|danRer3\|chrNA (101691557-101691785)
	1-185, gnl\|dasNov1\|scaffold_819 (51498-51747)
	1-185, gnl\|echTel1\|scaffold_255703 (805-1054)
	1-185, gnl\|fr1\|chrUn (15204269-15204509)
	1-185, gnl\|galGal2\|chr3 (28363581-28363334)
	1-185, gnl\|hg17\|chr2 (37139377-37139629)
	1-185, gnl\|Hg17\|chr2 (37139567-37139380)
	1-185, gnl\|loxAfr1\|scaffold_55203 (5577-5826)
	1-185, gnl\|mm7\|chr17 (77060967-77061216)
	1-185, gnl\|Mm7\|chr17 (77061154-77060970)
	1-185, gnl\|monDom2\|scaffold_1 (134961280-134961033)
	1-185, gnl\|oryCun1\|scaffold_156023 (10162-10411)
	1-185, gnl\|panTro1\|chr12 (38591044-38591296)
	1-185, gnl\|rheMac2\|chr13 (36982598-36982850)
	1-185, gnl\|rn3\|chr6 (1547648-1547895)
	1-185, gnl\|tetNig1\|chr17 (2144979-2144748)
	1-185, gnl\|xenTro1\|scaffold_581 (53053-52809)