Non-Coding RNA Search

Ss1.1-Pig1-118G16.5

Sequence:


               
               ACACACCACGTGTTATTTAATTTGTAGTATTGTGGAACAGTGCTGTTAGGAGTGCCAGGT
TAGAGGTAATTGCAAACTTGTCTAGAAATGAGAGCATGTTTTTTTTGTGTGTGTGTTTTT
GTGTTTGTTTTTTAAGCCCTCTGAGGATCTACGTGATGAACATTCTTGGTCACCCATAAA
TAACTTCAAGCCTCAATGTCGGGACAGTGTTGGAATGCTCCTTCTCATCCCCGCCTCCCA
GGCAGGACCGGGTTCCCTACATTTCCTTCCATAAACATGAACCTGTGTTGGCCTCATTTG
CCCTGACTTTTGTCTAGCCCTGTCTTGGGTGTGGCCAGAGTTCCCACTTCCTGTTTTTAG
AAAAGCCTTCCCTCCTGGGAGCTGCTTAGCTGAATCATTAGGGATGAGATGTCGGGGGCT
TGGGGTTCCTGGACAATGGGCCTATTAGAGATGGCAAGCTGGACATTCCGACTTTCCCCT
TGATTCCTGGTAGTTGCTTTATGTTTTGTGATGAATGAGGTTAAGTGAATTCTACAACTG
AAAAAATATGGGTTCCAACAGGCAGGTAGGTCTGAAAGAGGAACTGCTTTGAGGGGGAGG
AAAAGAAGCTTCGGGTGAGTTGCTTTTTGTGGAATGAGTGTACATTTGCCAAAACCTGTG
TGCATCCTGCTTTCCCAGACTGGATTCCAACCACACAGACAGTTGGAGCCCAGGACCCGC
CCAGCCAGGTCTTTTCTCTGCTTTCCAATTCACGTCTTATATCTCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACACCACGTGTTATTTAATTTGTAGTATTGTGGAACAGTGCTGTTAGGAGTGCCAGGT
TAGAGGTAATTGCAAACTTGTCTAGAAATGAGAGCATGTTTTTTTTGTGTGTGTGTTTTT
GTGTTTGTTTTTTAAGCCCTCTGAGGATCTACGTGATGAACATTCTTGGTCACCCATAAA
TAACTTCAAGCCTCAATGTCGGGACAGTGTTGGAATGCTCCTTCTCATCCCCGCCTCCCA
GGCAGGACCGGGTTCCCTACATTTCCTTCCATAAACATGAACCTGTGTTGGCCTCATTTG
CCCTGACTTTTGTCTAGCCCTGTCTTGGGTGTGGCCAGAGTTCCCACTTCCTGTTTTTAG
AAAAGCCTTCCCTCCTGGGAGCTGCTTAGCTGAATCATTAGGGATGAGATGTCGGGGGCT
TGGGGTTCCTGGACAATGGGCCTATTAGAGATGGCAAGCTGGACATTCCGACTTTCCCCT
TGATTCCTGGTAGTTGCTTTATGTTTTGTGATGAATGAGGTTAAGTGAATTCTACAACTG
AAAAAATATGGGTTCCAACAGGCAGGTAGGTCTGAAAGAGGAACTGCTTTGAGGGGGAGG
AAAAGAAGCTTCGGGTGAGTTGCTTTTTGTGGAATGAGTGTACATTTGCCAAAACCTGTG
TGCATCCTGCTTTCCCAGACTGGATTCCAACCACACAGACAGTTGGAGCCCAGGACCCGC
CCAGCCAGGTCTTTTCTCTGCTTTCCAATTCACGTCTTATATCTCAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               624-742, - strand, RNAz p=0.970917

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               624-742, - strand, RNAz p=0.970917

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-766, gnl|bosTau2|chr27 (17732825-17732080)
               

               
               5-766, gnl|Hg17|chr8 (29248628-29247925)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-766, gnl|bosTau2|chr27 (17732825-17732080)
               

               
               5-766, gnl|Hg17|chr8 (29248628-29247925)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	5-766, gnl\|bosTau2\|chr27 (17732825-17732080)
	5-766, gnl\|Hg17\|chr8 (29248628-29247925)