Non-Coding RNA Search

Ss1.1-Pig1-118M20.5

Sequence:


               
               TAGCAAGGTCCGGGTCTGGGGCAAGGGTCTGTCCGAGGGACAGACGTTCCAGGTGGCGGA
GTTCATCGTGGACACTCGGAACGCAGGCTACGGGGGCCTGGGGCTGAGCATTGAAGGCCC
AAGCAAGGTGGACATCAACTGTGAGGATATGGAGGATGGCACCTGCAAAGTCACCTACTG
CCCCACCGAACCCGGCACCTACATCATCAACATCAAGTTTGCCGACAAGCACGTACCTGG
AAGCCCCTTCACGGTGAAGGTGACGGGCGAGGGCCGCATGAAGGAGAGCATCACGCGGCG
CAGGCAGGCGCCTTCCATCGCCACCATCGGCAGCACCTGCGACCTCAACCTCAAGATCCC
AGGGAACTGGTTCCAGATGGTGTCTGCCCAGGAGCGCCTGACACGTACCTTCACCCGCAG
CAGCCACACGTACACCCGCACGGAGCGCACGGAGATCAGCAAGACGCGGGGTGGGGAGAC
CAAGCGCGAGGTGCGGGTGGAGGAGTCCACTCAGGTTGGCGGAGACCCCTTCCCCGCCGT
CTTCGGGGACTTCCTGGGCCGGGAACGTCTGGGCTCTTTCGGCAGCATCACTCGGCAGCA
AGAGGGTGAGGCCAGCTCTCAGGACATGACCGCACAGGTGACCAGCCCCTCAGGCAAGAC
GGAGGCCGCGGAGATCGTGGAGGGGGAGGACAGCGCGTACAGCGTGCGCTTCGTGCCCCA
GGAGATGGGGCCCCACACGGTCACCGTCAAGTACCGCGGCCAGCACGTGCCAGGCAGCCC
CTTTCAGTTCACCGTGGGGCCACTGGGTGAAGGTGGTGCCCACAAGGTGCGGGCTGGAGG
CACAGGGCTAGAGCGAGGGGTGGCCGGTGTGCCAGCCGAGTTCAGCATCTGGACCCGAGA
AGCTGGTGCCGGGGGCCTGTCTATTGCTGTGGAGGGCCCCAGCAAGGCAGAGATTGCATT
TGAGGACCGCAAAGATGGCTCCTGCGGGGTCTCCTATGTCGTCCAGGAACCAGGTGACTA
TGAGGTCTCCATCAAGTTCAATGATGAGCACATCCCGGACAGCCCCTTTGTGGTGCCCGT
GGCCTCCCTCTCGGATGATGCTCGCCGTCTTACTGTCACCAGCCTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCAAGGTCCGGGTCTGGGGCAAGGGTCTGTCCGAGGGACAGACGTTCCAGGTGGCGGA
GTTCATCGTGGACACTCGGAACGCAGGCTACGGGGGCCTGGGGCTGAGCATTGAAGGCCC
AAGCAAGGTGGACATCAACTGTGAGGATATGGAGGATGGCACCTGCAAAGTCACCTACTG
CCCCACCGAACCCGGCACCTACATCATCAACATCAAGTTTGCCGACAAGCACGTACCTGG
AAGCCCCTTCACGGTGAAGGTGACGGGCGAGGGCCGCATGAAGGAGAGCATCACGCGGCG
CAGGCAGGCGCCTTCCATCGCCACCATCGGCAGCACCTGCGACCTCAACCTCAAGATCCC
AGGGAACTGGTTCCAGATGGTGTCTGCCCAGGAGCGCCTGACACGTACCTTCACCCGCAG
CAGCCACACGTACACCCGCACGGAGCGCACGGAGATCAGCAAGACGCGGGGTGGGGAGAC
CAAGCGCGAGGTGCGGGTGGAGGAGTCCACTCAGGTTGGCGGAGACCCCTTCCCCGCCGT
CTTCGGGGACTTCCTGGGCCGGGAACGTCTGGGCTCTTTCGGCAGCATCACTCGGCAGCA
AGAGGGTGAGGCCAGCTCTCAGGACATGACCGCACAGGTGACCAGCCCCTCAGGCAAGAC
GGAGGCCGCGGAGATCGTGGAGGGGGAGGACAGCGCGTACAGCGTGCGCTTCGTGCCCCA
GGAGATGGGGCCCCACACGGTCACCGTCAAGTACCGCGGCCAGCACGTGCCAGGCAGCCC
CTTTCAGTTCACCGTGGGGCCACTGGGTGAAGGTGGTGCCCACAAGGTGCGGGCTGGAGG
CACAGGGCTAGAGCGAGGGGTGGCCGGTGTGCCAGCCGAGTTCAGCATCTGGACCCGAGA
AGCTGGTGCCGGGGGCCTGTCTATTGCTGTGGAGGGCCCCAGCAAGGCAGAGATTGCATT
TGAGGACCGCAAAGATGGCTCCTGCGGGGTCTCCTATGTCGTCCAGGAACCAGGTGACTA
TGAGGTCTCCATCAAGTTCAATGATGAGCACATCCCGGACAGCCCCTTTGTGGTGCCCGT
GGCCTCCCTCTCGGATGATGCTCGCCGTCTTACTGTCACCAGCCTCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               757-875, + strand, RNAz p=0.983724

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               757-875, + strand, RNAz p=0.983724

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               605-875, gnl|bosTau2|chr4 (50485472-50485202)
               

               
               605-875, gnl|canFam2|chr14 (10753969-10753691)
               

               
               605-875, gnl|danRer3|chrUn (92103003-92102725)
               

               
               605-875, gnl|dasNov1|scaffold_1198 (33535-33257)
               

               
               605-875, gnl|echTel1|scaffold_175788 (1115-1385)
               

               
               605-875, gnl|fr1|chrUn (177075307-177075029)
               

               
               605-875, gnl|galGal2|chr12 (8978963-8979234)
               

               
               605-875, gnl|hg17|chr7 (128088414-128088692)
               

               
               605-875, gnl|Hg17|chr7 (128088417-128088687)
               

               
               605-875, gnl|loxAfr1|scaffold_56236 (471-198)
               

               
               605-875, gnl|mm7|chr6 (29388879-29389157)
               

               
               605-875, gnl|Mm7|chr6 (29388882-29389152)
               

               
               605-875, gnl|monDom2|scaffold_22 (15730708-15730430)
               

               
               605-875, gnl|oryCun1|scaffold_111430 (6799-7093)
               

               
               605-875, gnl|panTro1|chr6 (130480048-130480326)
               

               
               605-875, gnl|rheMac2|chr3 (166184294-166184572)
               

               
               605-875, gnl|rn3|chr4 (56594943-56595221)
               

               
               605-875, gnl|tetNig1|chr13 (9993413-9993691)
               

               
               605-875, gnl|xenTro1|scaffold_20 (3268332-3268607)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               605-875, gnl|bosTau2|chr4 (50485472-50485202)
               

               
               605-875, gnl|canFam2|chr14 (10753969-10753691)
               

               
               605-875, gnl|danRer3|chrUn (92103003-92102725)
               

               
               605-875, gnl|dasNov1|scaffold_1198 (33535-33257)
               

               
               605-875, gnl|echTel1|scaffold_175788 (1115-1385)
               

               
               605-875, gnl|fr1|chrUn (177075307-177075029)
               

               
               605-875, gnl|galGal2|chr12 (8978963-8979234)
               

               
               605-875, gnl|hg17|chr7 (128088414-128088692)
               

               
               605-875, gnl|Hg17|chr7 (128088417-128088687)
               

               
               605-875, gnl|loxAfr1|scaffold_56236 (471-198)
               

               
               605-875, gnl|mm7|chr6 (29388879-29389157)
               

               
               605-875, gnl|Mm7|chr6 (29388882-29389152)
               

               
               605-875, gnl|monDom2|scaffold_22 (15730708-15730430)
               

               
               605-875, gnl|oryCun1|scaffold_111430 (6799-7093)
               

               
               605-875, gnl|panTro1|chr6 (130480048-130480326)
               

               
               605-875, gnl|rheMac2|chr3 (166184294-166184572)
               

               
               605-875, gnl|rn3|chr4 (56594943-56595221)
               

               
               605-875, gnl|tetNig1|chr13 (9993413-9993691)
               

               
               605-875, gnl|xenTro1|scaffold_20 (3268332-3268607)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	605-875, gnl\|bosTau2\|chr4 (50485472-50485202)
	605-875, gnl\|canFam2\|chr14 (10753969-10753691)
	605-875, gnl\|danRer3\|chrUn (92103003-92102725)
	605-875, gnl\|dasNov1\|scaffold_1198 (33535-33257)
	605-875, gnl\|echTel1\|scaffold_175788 (1115-1385)
	605-875, gnl\|fr1\|chrUn (177075307-177075029)
	605-875, gnl\|galGal2\|chr12 (8978963-8979234)
	605-875, gnl\|hg17\|chr7 (128088414-128088692)
	605-875, gnl\|Hg17\|chr7 (128088417-128088687)
	605-875, gnl\|loxAfr1\|scaffold_56236 (471-198)
	605-875, gnl\|mm7\|chr6 (29388879-29389157)
	605-875, gnl\|Mm7\|chr6 (29388882-29389152)
	605-875, gnl\|monDom2\|scaffold_22 (15730708-15730430)
	605-875, gnl\|oryCun1\|scaffold_111430 (6799-7093)
	605-875, gnl\|panTro1\|chr6 (130480048-130480326)
	605-875, gnl\|rheMac2\|chr3 (166184294-166184572)
	605-875, gnl\|rn3\|chr4 (56594943-56595221)
	605-875, gnl\|tetNig1\|chr13 (9993413-9993691)
	605-875, gnl\|xenTro1\|scaffold_20 (3268332-3268607)