Ss1.1-Pig1-118P08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAGGAGCCAGGCAACGAAACAACACTGAAAAGAACCACCCAGGTGGGAGCAAGTCGGA GACTGGTTCTGGAGAGGGCGGAGTGGCCCTGAAAGAAAGAGATTGGATTGGTCAGTGCTT GTGGTATCATTGTAGGGAACATCATCGGCTCTGGAATCTTCGTCTCACCCAAAGCGTGCT GGAGAATGCTGGCTCTGTGGGCCTCGCTCTCATCGTCTGGATCGTGACAGGTCTCATCAC AGCTGTAGGAGCCCTGTGTTATGCTGAGCTCGGGGTCACTATCCCCAAATCTGGAGGTGA CTACTCCTACGTCAAGGACATCTTTGGAGGACTGGCTGGGTTCCTGAGGCTGTGGATTGC TGTGCTGGTGATCTACCCCACCAACCAGGCCGTCATTGCCCTCACCTTCTCCAACTACGT GCTACAGCCGCTCTTCCCCACCTGCTTCCCTCCGGAGTCTGGCCTTCGCCTCCTGGCTGC TGTCTGCTTATTGCTCCTCACATGGGTCAACTGTTCGAGTGTGCGGTGGGCCACCCGGGT TCAAGACGTTTTCACAGCTGGCAAGCTCCTGGCCCTGGGCCTGATCATCATCATGGGAGT TGTACAGATCTGCAAAGGACAATACTTCTGGCTGGAGCCAAAGAATGCATTTGAGAATTT CCAGGAACCTGACATTGGCCTCATCGCACTGGCTTTCCTTCAGGGCTCCTTTGCCTACGG AGGCTGGAACTTCCTCAATTATGTGACTGAGGAACTTGTGGATCCCTACAAGAACCTTCC CAGAGCCATCTTCATCTCCATCCCACTGGTCACATTTGTGTATGTTTTTGCCAATGTCGC TTATGTCACTGCAATGTCCCCCCAGGAGCTGCTGGCATCAAATGCAGTCGCTGTGACTTT TGGAGAGAAGCTCCTAGGGGTCATGGCCTGGATCATGCCCATTTCCGTCGCCCTGTCCAC ATTCGGAGGAGTAAACGGGTCCCTCTTCACCTCCTCCCGGCTGTTCTTTGCTGGAGCCAG GGAGGGCCACCTTCCCAGCGTGTTGGCCATGATCCATGTGAAGCGCTGCACCCCAATCCC AGCCCTGCTCTTCACATGCATCTCCACCCTGCTGATGCTTGTCACCAGTGATATGTACAC GCTCATCAACTACGTGGGCTTCATCAACTACCTCTTCTATGGCATCACGATTGCCGGACA GATAGTTCTTCGCTGGAAGAAGCCTAACATCCCCCGCCCCATCAAGGTCAACTTGCTGTT CCCCATCATCTACTTGCTGTTCTGGGCCTTCCTGCTGGTCTTCAGCCTGTGGTCGGAGCC CGTGGTGTGTGGCACCGGCCTGGCTATCATGCTGACAGGAGTGCCCGTCTATTTCCTGGG AGTTTACTGGCAACACAAGCCCAGGTGTTTCAATAAGTTCATTGAGTTGTTGACCCTGGT GAGCCAGAAGATGTGTGTGGTCGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAGGAGCCAGGCAACGAAACAACACTGAAAAGAACCACCCAGGTGGGAGCAAGTCGGA GACTGGTTCTGGAGAGGGCGGAGTGGCCCTGAAAGAAAGAGATTGGATTGGTCAGTGCTT GTGGTATCATTGTAGGGAACATCATCGGCTCTGGAATCTTCGTCTCACCCAAAGCGTGCT GGAGAATGCTGGCTCTGTGGGCCTCGCTCTCATCGTCTGGATCGTGACAGGTCTCATCAC AGCTGTAGGAGCCCTGTGTTATGCTGAGCTCGGGGTCACTATCCCCAAATCTGGAGGTGA CTACTCCTACGTCAAGGACATCTTTGGAGGACTGGCTGGGTTCCTGAGGCTGTGGATTGC TGTGCTGGTGATCTACCCCACCAACCAGGCCGTCATTGCCCTCACCTTCTCCAACTACGT GCTACAGCCGCTCTTCCCCACCTGCTTCCCTCCGGAGTCTGGCCTTCGCCTCCTGGCTGC TGTCTGCTTATTGCTCCTCACATGGGTCAACTGTTCGAGTGTGCGGTGGGCCACCCGGGT TCAAGACGTTTTCACAGCTGGCAAGCTCCTGGCCCTGGGCCTGATCATCATCATGGGAGT TGTACAGATCTGCAAAGGACAATACTTCTGGCTGGAGCCAAAGAATGCATTTGAGAATTT CCAGGAACCTGACATTGGCCTCATCGCACTGGCTTTCCTTCAGGGCTCCTTTGCCTACGG AGGCTGGAACTTCCTCAATTATGTGACTGAGGAACTTGTGGATCCCTACAAGAACCTTCC CAGAGCCATCTTCATCTCCATCCCACTGGTCACATTTGTGTATGTTTTTGCCAATGTCGC TTATGTCACTGCAATGTCCCCCCAGGAGCTGCTGGCATCAAATGCAGTCGCTGTGACTTT TGGAGAGAAGCTCCTAGGGGTCATGGCCTGGATCATGCCCATTTCCGTCGCCCTGTCCAC ATTCGGAGGAGTAAACGGGTCCCTCTTCACCTCCTCCCGGCTGTTCTTTGCTGGAGCCAG GGAGGGCCACCTTCCCAGCGTGTTGGCCATGATCCATGTGAAGCGCTGCACCCCAATCCC AGCCCTGCTCTTCACATGCATCTCCACCCTGCTGATGCTTGTCACCAGTGATATGTACAC GCTCATCAACTACGTGGGCTTCATCAACTACCTCTTCTATGGCATCACGATTGCCGGACA GATAGTTCTTCGCTGGAAGAAGCCTAACATCCCCCGCCCCATCAAGGTCAACTTGCTGTT CCCCATCATCTACTTGCTGTTCTGGGCCTTCCTGCTGGTCTTCAGCCTGTGGTCGGAGCC CGTGGTGTGTGGCACCGGCCTGGCTATCATGCTGACAGGAGTGCCCGTCTATTTCCTGGG AGTTTACTGGCAACACAAGCCCAGGTGTTTCAATAAGTTCATTGAGTTGTTGACCCTGGT GAGCCAGAAGATGTGTGTGGTCGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1284-1403, + strand, RNAz p=0.963211 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1284-1403, + strand, RNAz p=0.963211 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 93-487, gnl|bosTau2|chr10 (14187516-14187911) | |
| 93-487, gnl|Hg17|chr14 (22352348-22351953) | |
| 93-487, gnl|Mm7|chr14 (49275127-49274732) | |
| 134-341, gnl|bosTau2|chr10 (13901468-13901676) | |
| 134-341, gnl|canFam2|chr8 (6466647-6466901) | |
| 134-341, gnl|danRer3|chr2 (34052242-34052029) | |
| 134-341, gnl|dasNov1|scaffold_60539 (11288-11074) | |
| 134-341, gnl|echTel1|scaffold_317131 (40789-41044) | |
| 134-341, gnl|fr1|chrUn (36769373-36769143) | |
| 134-341, gnl|galGal2|chr11 (10302808-10303029) | |
| 134-341, gnl|hg17|chr14 (22705356-22705610) | |
| 134-341, gnl|Hg17|chr14 (22705591-22705383) | |
| 134-341, gnl|loxAfr1|scaffold_20571 (29043-29293) | |
| 134-341, gnl|mm7|chr14 (49626448-49626696) | |
| 134-341, gnl|Mm7|chr14 (49626681-49626473) | |
| 134-341, gnl|monDom2|scaffold_12 (26572020-26571781) | |
| 134-341, gnl|oryCun1|scaffold_201358 (70104-70353) | |
| 134-341, gnl|panTro1|chr15 (21676175-21676429) | |
| 134-341, gnl|rheMac2|chr7 (85997801-85998055) | |
| 134-341, gnl|rn3|chr15 (32858120-32858370) | |
| 134-341, gnl|tetNig1|chrUn_random (21395628-21395851) | |
| 134-341, gnl|xenTro1|scaffold_53 (295867-295650) | |
| 613-799, gnl|bosTau2|chr10 (13926741-13926927) | |
| 613-799, gnl|Hg17|chr14 (22679678-22679488) | |
| 613-799, gnl|Mm7|chr14 (49602816-49602625) | |
| 991-1096, gnl|bosTau2|chr10 (13932862-13932967) | |
| 991-1096, gnl|canFam2|chr8 (6439040-6439159) | |
| 991-1096, gnl|danRer3|chr2 (34062431-34062312) | |
| 991-1096, gnl|dasNov1|scaffold_2820 (92610-92729) | |
| 991-1096, gnl|echTel1|scaffold_317131 (9011-9130) | |
| 991-1096, gnl|fr1|chrUn (36772005-36771892) | |
| 991-1096, gnl|hg17|chr14 (22670506-22670625) | |
| 991-1096, gnl|Hg17|chr14 (22670615-22670510) | |
| 991-1096, gnl|loxAfr1|scaffold_7132 (90890-90989) | |
| 991-1096, gnl|mm7|chr14 (49596263-49596382) | |
| 991-1096, gnl|Mm7|chr14 (49596372-49596267) | |
| 991-1096, gnl|monDom2|scaffold_12 (26624249-26624130) | |
| 991-1096, gnl|oryCun1|scaffold_201358 (42049-42169) | |
| 991-1096, gnl|panTro1|chr15 (21640862-21640981) | |
| 991-1096, gnl|rheMac2|chr7 (85961933-85962052) | |
| 991-1096, gnl|rn3|chr15 (32823862-32823981) | |
| 991-1096, gnl|tetNig1|chrUn_random (21391626-21391737) | |
| 991-1096, gnl|xenTro1|scaffold_53 (312354-312245) | |
| 1245-1444, gnl|bosTau2|chr10 (13936624-13936826) | |
| 1245-1444, gnl|Hg17|chr14 (22667247-22667045) | |
| 1245-1444, gnl|Mm7|chr14 (49591851-49591659) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 93-487, gnl|bosTau2|chr10 (14187516-14187911) | |
| 93-487, gnl|Hg17|chr14 (22352348-22351953) | |
| 93-487, gnl|Mm7|chr14 (49275127-49274732) | |
| 134-341, gnl|bosTau2|chr10 (13901468-13901676) | |
| 134-341, gnl|canFam2|chr8 (6466647-6466901) | |
| 134-341, gnl|danRer3|chr2 (34052242-34052029) | |
| 134-341, gnl|dasNov1|scaffold_60539 (11288-11074) | |
| 134-341, gnl|echTel1|scaffold_317131 (40789-41044) | |
| 134-341, gnl|fr1|chrUn (36769373-36769143) | |
| 134-341, gnl|galGal2|chr11 (10302808-10303029) | |
| 134-341, gnl|hg17|chr14 (22705356-22705610) | |
| 134-341, gnl|Hg17|chr14 (22705591-22705383) | |
| 134-341, gnl|loxAfr1|scaffold_20571 (29043-29293) | |
| 134-341, gnl|mm7|chr14 (49626448-49626696) | |
| 134-341, gnl|Mm7|chr14 (49626681-49626473) | |
| 134-341, gnl|monDom2|scaffold_12 (26572020-26571781) | |
| 134-341, gnl|oryCun1|scaffold_201358 (70104-70353) | |
| 134-341, gnl|panTro1|chr15 (21676175-21676429) | |
| 134-341, gnl|rheMac2|chr7 (85997801-85998055) | |
| 134-341, gnl|rn3|chr15 (32858120-32858370) | |
| 134-341, gnl|tetNig1|chrUn_random (21395628-21395851) | |
| 134-341, gnl|xenTro1|scaffold_53 (295867-295650) | |
| 613-799, gnl|bosTau2|chr10 (13926741-13926927) | |
| 613-799, gnl|Hg17|chr14 (22679678-22679488) | |
| 613-799, gnl|Mm7|chr14 (49602816-49602625) | |
| 991-1096, gnl|bosTau2|chr10 (13932862-13932967) | |
| 991-1096, gnl|canFam2|chr8 (6439040-6439159) | |
| 991-1096, gnl|danRer3|chr2 (34062431-34062312) | |
| 991-1096, gnl|dasNov1|scaffold_2820 (92610-92729) | |
| 991-1096, gnl|echTel1|scaffold_317131 (9011-9130) | |
| 991-1096, gnl|fr1|chrUn (36772005-36771892) | |
| 991-1096, gnl|hg17|chr14 (22670506-22670625) | |
| 991-1096, gnl|Hg17|chr14 (22670615-22670510) | |
| 991-1096, gnl|loxAfr1|scaffold_7132 (90890-90989) | |
| 991-1096, gnl|mm7|chr14 (49596263-49596382) | |
| 991-1096, gnl|Mm7|chr14 (49596372-49596267) | |
| 991-1096, gnl|monDom2|scaffold_12 (26624249-26624130) | |
| 991-1096, gnl|oryCun1|scaffold_201358 (42049-42169) | |
| 991-1096, gnl|panTro1|chr15 (21640862-21640981) | |
| 991-1096, gnl|rheMac2|chr7 (85961933-85962052) | |
| 991-1096, gnl|rn3|chr15 (32823862-32823981) | |
| 991-1096, gnl|tetNig1|chrUn_random (21391626-21391737) | |
| 991-1096, gnl|xenTro1|scaffold_53 (312354-312245) | |
| 1245-1444, gnl|bosTau2|chr10 (13936624-13936826) | |
| 1245-1444, gnl|Hg17|chr14 (22667247-22667045) | |
| 1245-1444, gnl|Mm7|chr14 (49591851-49591659) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |