Non-Coding RNA Search

Ss1.1-Pig1-119H15.5

Sequence:


               
               GCTACATAAGAGAATATTTCCCCTGAAGGGTAATTTTAGTGGGATGAGGGTGGTGGGATG
ATGTAATATCATATATGGGATTGCATCAGAAGGGTTCTGTAAAGCCTAAACTCCCTCTTA
AAAGTGCCTAGTGATAGAGGCGTTGTTTGTCATCTGTTATAATTGGAATGTCATTGTAGT
TGAGTGAAGTTTGATGTAAATAAAATATTCTTTTAAAAATGTTAAGGTACCAGAATAAAC
AAACAAAATAAAGAAACAACCCTTAAGATGACAGATTTTCCTCAATGTGCAGGTACCCCT
TCTTATATACCTCAAGCATTCAACATCTAGCCATGCAAATTGATTACCTGAAGCATAGTA
CTGGAAAGTAGAATAGCATGAAAAACTTAATTTTGTGGACATTACCTTTTTTTGTAATCA
GCTACTGTATGTTTTATTTTAAATCTTTTGTTTTGTGTGGGTTTTCTGCTCTGGAGGTAT
ATGCACTAACAGAACATTTTCCTCCTTTCATATACGCATGTTAATTAGCAATGTGAGCAA
TATTTCCTACCATACTTCACTCCCAATATTTTTTGAGATGTTTGTATAAAATGGAATTTA
AAGTTCACTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTACATAAGAGAATATTTCCCCTGAAGGGTAATTTTAGTGGGATGAGGGTGGTGGGATG
ATGTAATATCATATATGGGATTGCATCAGAAGGGTTCTGTAAAGCCTAAACTCCCTCTTA
AAAGTGCCTAGTGATAGAGGCGTTGTTTGTCATCTGTTATAATTGGAATGTCATTGTAGT
TGAGTGAAGTTTGATGTAAATAAAATATTCTTTTAAAAATGTTAAGGTACCAGAATAAAC
AAACAAAATAAAGAAACAACCCTTAAGATGACAGATTTTCCTCAATGTGCAGGTACCCCT
TCTTATATACCTCAAGCATTCAACATCTAGCCATGCAAATTGATTACCTGAAGCATAGTA
CTGGAAAGTAGAATAGCATGAAAAACTTAATTTTGTGGACATTACCTTTTTTTGTAATCA
GCTACTGTATGTTTTATTTTAAATCTTTTGTTTTGTGTGGGTTTTCTGCTCTGGAGGTAT
ATGCACTAACAGAACATTTTCCTCCTTTCATATACGCATGTTAATTAGCAATGTGAGCAA
TATTTCCTACCATACTTCACTCCCAATATTTTTTGAGATGTTTGTATAAAATGGAATTTA
AAGTTCACTTAT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               41-159, - strand, RNAz p=0.899122
               

               
               240-359, - strand, RNAz p=0.507396
               

               
               440-557, + strand, RNAz p=0.760144

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-159, - strand, RNAz p=0.899122
               

               
               240-359, - strand, RNAz p=0.507396
               

               
               440-557, + strand, RNAz p=0.760144

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               27-129, + strand, RNAmicro p=0.996583
               

               
               262-433, - strand, RNAmicro p=0.988014

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               27-129, + strand, RNAmicro p=0.996583
               

               
               262-433, - strand, RNAmicro p=0.988014

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr6 (50553793-50553186)
               

               
               1-612, gnl|Hg17|chr4 (78997061-78996455)
               

               
               1-612, gnl|Mm7|chr5 (95288730-95288139)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr6 (50553793-50553186)
               

               
               1-612, gnl|Hg17|chr4 (78997061-78996455)
               

               
               1-612, gnl|Mm7|chr5 (95288730-95288139)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               pgl (0.118483)

	41-159, - strand, RNAz p=0.899122
	240-359, - strand, RNAz p=0.507396
	440-557, + strand, RNAz p=0.760144

	27-129, + strand, RNAmicro p=0.996583
	262-433, - strand, RNAmicro p=0.988014

	1-612, gnl\|bosTau2\|chr6 (50553793-50553186)
	1-612, gnl\|Hg17\|chr4 (78997061-78996455)
	1-612, gnl\|Mm7\|chr5 (95288730-95288139)