Non-Coding RNA Search

Ss1.1-Pig1-119L16.5

Sequence:


               
               CAAGATGGCTGGATTCACAACCTGCAGCTGCTGATGGAGCGATTCTTCAGGAATGAGGCG
CGCAGCGCTGTGCGGATCAAGGTACTGGACGTCCTGTCCTTCGTGTTGCTCATCAACAAA
CAGTTCTACGAGGAGGAGCTCATCAACTCGGTGGTCATCTCACAGCTCTCCCACATCCCC
GAGGACAGAGACCACCAGGTCCGAAAGCTTGCCACCCAGCTGCTGGTGGACCTGGCCGAA
GGCTGCCACACCCACCACTTCAACAGCCTGCTGGACATCATTGAGAAGGTGATTGCCCGC
TCCCTCTCGCCACCCCCCGAGCTGGAGGAGAGGGACGTGGCGGCGTACTCGGCCTCCTTG
GAGGACGTGAAGACAGCGGTCCTGGGGCTCCTGGTCATCCTGCAGACCAAGCTCTACGCC
CTGCCCGCCAGCCACGCCATGCGCGTGTATGAGACGCTCGTCAGCCACCTCCAGCTCCAC
TACAAGCACAGTTACACCCTGCCCATCGCCAGCAGCATCCGGCTGCAGGCCTTCGACTTC
CTGCTGATGCTGCGGGCCGATTCCTTGCACCGCCTCGGGCTGCCCAACAAGGACGGGGTT
GTGAGGTTCAGCCCCTACTGCCTCTGTGACTACGTGGAGCCGGAGAGAGGCTCTGAGAAG
AAGGCCAGTGGTCCCCTGTCACCTCCCACCGGGCCACCTGGCCCAGTGCCCACAGGCCCC
ACCGTGCGGCTGGGCTCGCTGCCCTACTCCCTGCTCTTCCGTGTCCTTCTGCAGTGTTTG
AAGCAGGAGACGGACTGGAAGGTGCTCCGGCTGGTGCTCAGCAAGCTGCCCGAGTCGCTC
CGCTACAAGGTCCTCACCTTCACGTCGCCCTGCAGCGTGGACCAGCTGTCGGCCGCCCTC
TGCTCCATGCTTTCAGGCCCCAAGACCCTTGAGCGGCTCCGAGGCACCCCGGAAGGGTTT
TCCAGAACCGACCTGCATCTCGCTGTGGTTCCCGTGCTGACGGCATTAATCTCGTACCAT
AACTACTTGGACAAAACCAGACAGCGGGAGATGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGATGGCTGGATTCACAACCTGCAGCTGCTGATGGAGCGATTCTTCAGGAATGAGGCG
CGCAGCGCTGTGCGGATCAAGGTACTGGACGTCCTGTCCTTCGTGTTGCTCATCAACAAA
CAGTTCTACGAGGAGGAGCTCATCAACTCGGTGGTCATCTCACAGCTCTCCCACATCCCC
GAGGACAGAGACCACCAGGTCCGAAAGCTTGCCACCCAGCTGCTGGTGGACCTGGCCGAA
GGCTGCCACACCCACCACTTCAACAGCCTGCTGGACATCATTGAGAAGGTGATTGCCCGC
TCCCTCTCGCCACCCCCCGAGCTGGAGGAGAGGGACGTGGCGGCGTACTCGGCCTCCTTG
GAGGACGTGAAGACAGCGGTCCTGGGGCTCCTGGTCATCCTGCAGACCAAGCTCTACGCC
CTGCCCGCCAGCCACGCCATGCGCGTGTATGAGACGCTCGTCAGCCACCTCCAGCTCCAC
TACAAGCACAGTTACACCCTGCCCATCGCCAGCAGCATCCGGCTGCAGGCCTTCGACTTC
CTGCTGATGCTGCGGGCCGATTCCTTGCACCGCCTCGGGCTGCCCAACAAGGACGGGGTT
GTGAGGTTCAGCCCCTACTGCCTCTGTGACTACGTGGAGCCGGAGAGAGGCTCTGAGAAG
AAGGCCAGTGGTCCCCTGTCACCTCCCACCGGGCCACCTGGCCCAGTGCCCACAGGCCCC
ACCGTGCGGCTGGGCTCGCTGCCCTACTCCCTGCTCTTCCGTGTCCTTCTGCAGTGTTTG
AAGCAGGAGACGGACTGGAAGGTGCTCCGGCTGGTGCTCAGCAAGCTGCCCGAGTCGCTC
CGCTACAAGGTCCTCACCTTCACGTCGCCCTGCAGCGTGGACCAGCTGTCGGCCGCCCTC
TGCTCCATGCTTTCAGGCCCCAAGACCCTTGAGCGGCTCCGAGGCACCCCGGAAGGGTTT
TCCAGAACCGACCTGCATCTCGCTGTGGTTCCCGTGCTGACGGCATTAATCTCGTACCAT
AACTACTTGGACAAAACCAGACAGCGGGAGATGGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               141-260, - strand, RNAz p=0.585394

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               141-260, - strand, RNAz p=0.585394

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               131-297, gnl|bosTau2|chr25 (2789121-2789287)
               

               
               131-297, gnl|canFam2|chr6 (41928120-41927940)
               

               
               131-297, gnl|dasNov1|scaffold_139670 (4447-4265)
               

               
               131-297, gnl|echTel1|scaffold_233295 (8184-8360)
               

               
               131-297, gnl|fr1|chrUn (217937523-217937340)
               

               
               131-297, gnl|galGal2|chr14 (8316356-8316528)
               

               
               131-297, gnl|hg17|chr16 (2054259-2054439)
               

               
               131-297, gnl|Hg17|chr16 (2054272-2054438)
               

               
               131-297, gnl|loxAfr1|scaffold_23244 (36809-36986)
               

               
               131-297, gnl|mm7|chr17 (22800413-22800232)
               

               
               131-297, gnl|Mm7|chr17 (22800397-22800231)
               

               
               131-297, gnl|monDom2|scaffold_5 (121211020-121210844)
               

               
               131-297, gnl|oryCun1|scaffold_28367 (3568-3387)
               

               
               131-297, gnl|panTro1|chr18_random (8410903-8410723)
               

               
               131-297, gnl|rheMac2|chr20 (2054474-2054654)
               

               
               131-297, gnl|rn3|chr10 (13869248-13869067)
               

               
               131-297, gnl|tetNig1|chr18 (2026151-2025989)
               

               
               131-297, gnl|xenTro1|scaffold_12 (1069037-1069212)
               


               
               909-1044, gnl|bosTau2|chr25 (2794560-2794695)
               

               
               909-1044, gnl|Hg17|chr16 (2062850-2062985)
               

               
               909-1044, gnl|Mm7|chr17 (22791397-22791262)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-297, gnl|bosTau2|chr25 (2789121-2789287)
               

               
               131-297, gnl|canFam2|chr6 (41928120-41927940)
               

               
               131-297, gnl|dasNov1|scaffold_139670 (4447-4265)
               

               
               131-297, gnl|echTel1|scaffold_233295 (8184-8360)
               

               
               131-297, gnl|fr1|chrUn (217937523-217937340)
               

               
               131-297, gnl|galGal2|chr14 (8316356-8316528)
               

               
               131-297, gnl|hg17|chr16 (2054259-2054439)
               

               
               131-297, gnl|Hg17|chr16 (2054272-2054438)
               

               
               131-297, gnl|loxAfr1|scaffold_23244 (36809-36986)
               

               
               131-297, gnl|mm7|chr17 (22800413-22800232)
               

               
               131-297, gnl|Mm7|chr17 (22800397-22800231)
               

               
               131-297, gnl|monDom2|scaffold_5 (121211020-121210844)
               

               
               131-297, gnl|oryCun1|scaffold_28367 (3568-3387)
               

               
               131-297, gnl|panTro1|chr18_random (8410903-8410723)
               

               
               131-297, gnl|rheMac2|chr20 (2054474-2054654)
               

               
               131-297, gnl|rn3|chr10 (13869248-13869067)
               

               
               131-297, gnl|tetNig1|chr18 (2026151-2025989)
               

               
               131-297, gnl|xenTro1|scaffold_12 (1069037-1069212)
               


               
               909-1044, gnl|bosTau2|chr25 (2794560-2794695)
               

               
               909-1044, gnl|Hg17|chr16 (2062850-2062985)
               

               
               909-1044, gnl|Mm7|chr17 (22791397-22791262)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	131-297, gnl\|bosTau2\|chr25 (2789121-2789287)
	131-297, gnl\|canFam2\|chr6 (41928120-41927940)
	131-297, gnl\|dasNov1\|scaffold_139670 (4447-4265)
	131-297, gnl\|echTel1\|scaffold_233295 (8184-8360)
	131-297, gnl\|fr1\|chrUn (217937523-217937340)
	131-297, gnl\|galGal2\|chr14 (8316356-8316528)
	131-297, gnl\|hg17\|chr16 (2054259-2054439)
	131-297, gnl\|Hg17\|chr16 (2054272-2054438)
	131-297, gnl\|loxAfr1\|scaffold_23244 (36809-36986)
	131-297, gnl\|mm7\|chr17 (22800413-22800232)
	131-297, gnl\|Mm7\|chr17 (22800397-22800231)
	131-297, gnl\|monDom2\|scaffold_5 (121211020-121210844)
	131-297, gnl\|oryCun1\|scaffold_28367 (3568-3387)
	131-297, gnl\|panTro1\|chr18_random (8410903-8410723)
	131-297, gnl\|rheMac2\|chr20 (2054474-2054654)
	131-297, gnl\|rn3\|chr10 (13869248-13869067)
	131-297, gnl\|tetNig1\|chr18 (2026151-2025989)
	131-297, gnl\|xenTro1\|scaffold_12 (1069037-1069212)

	909-1044, gnl\|bosTau2\|chr25 (2794560-2794695)
	909-1044, gnl\|Hg17\|chr16 (2062850-2062985)
	909-1044, gnl\|Mm7\|chr17 (22791397-22791262)