Non-Coding RNA Search

Ss1.1-Pig1-119M05.5

Sequence:


               
               GACCCGGTAGCGGCGGCGGCGGTGGCTGCGGCTACAGCAGCGGCGAAGGGAGCCAGATCC
CTGGCCGAAGCGGGAGACGGCGGTGGCGGCCATGGCTGCAGATGGAGAGCGATCCCCGCT
GCTCTCCGAGCCTATCGATGGTGGCGCCGGCGGCAACGGACTAGTAGGGCCGGGCGGGAG
TGGGGCTGGGCCTGGGGGAGGCCTGACCCCCTCCGCACCACCGTACGGAGCGGGTAAACA
TGCCCCGCCCCAGGCATTTCCCCCGTTCCCCGAGGGACACCCAGCTGTGTTGCCTGGGGA
GGACCCACCCCCCTATTCACCTCTGACCAGCCCGGACAGTGGGAGTGCTCCCATGATCAC
CTGCCGAGTCTGCCAGTCTCTCATCAACGTGGAAGGCAAGATGCATCAGCATGTAGTCAA
ATGTGGCGTCTGCAATGAAGCCACTCCAATCAAGAATGCACCCCCTGGGAAAAAATATGT
TCGTTGCCCCTGCAACTGTCTCCTTATCTGCAAAGTGACTTCCCAGCGGATTGCCTGCCC
TCGGCCTTACTGCAAAAGGATCATCAACCTGGGGCCTGTGCATCCAGGACCTCTGAGTCC
AGAACCACAACCTGTGGGTGTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCGGTAGCGGCGGCGGCGGTGGCTGCGGCTACAGCAGCGGCGAAGGGAGCCAGATCC
CTGGCCGAAGCGGGAGACGGCGGTGGCGGCCATGGCTGCAGATGGAGAGCGATCCCCGCT
GCTCTCCGAGCCTATCGATGGTGGCGCCGGCGGCAACGGACTAGTAGGGCCGGGCGGGAG
TGGGGCTGGGCCTGGGGGAGGCCTGACCCCCTCCGCACCACCGTACGGAGCGGGTAAACA
TGCCCCGCCCCAGGCATTTCCCCCGTTCCCCGAGGGACACCCAGCTGTGTTGCCTGGGGA
GGACCCACCCCCCTATTCACCTCTGACCAGCCCGGACAGTGGGAGTGCTCCCATGATCAC
CTGCCGAGTCTGCCAGTCTCTCATCAACGTGGAAGGCAAGATGCATCAGCATGTAGTCAA
ATGTGGCGTCTGCAATGAAGCCACTCCAATCAAGAATGCACCCCCTGGGAAAAAATATGT
TCGTTGCCCCTGCAACTGTCTCCTTATCTGCAAAGTGACTTCCCAGCGGATTGCCTGCCC
TCGGCCTTACTGCAAAAGGATCATCAACCTGGGGCCTGTGCATCCAGGACCTCTGAGTCC
AGAACCACAACCTGTGGGTGTCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28193210|emb|CAD62347.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28193210|emb|CAD62347.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-102, - strand, RNAz p=0.951119
               

               
               137-254, + strand, RNAz p=0.998364

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-102, - strand, RNAz p=0.951119
               

               
               137-254, + strand, RNAz p=0.998364

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-254, gnl|bosTau2|chr10 (16370858-16371117)
               

               
               1-254, gnl|Hg17|chr14 (19999430-19999162)
               

               
               1-254, gnl|Mm7|chr14 (46264745-46264510)
               


               
               446-574, gnl|bosTau2|chr10 (16371990-16372117)
               

               
               446-574, gnl|Hg17|chr14 (19998297-19998171)
               

               
               446-574, gnl|Mm7|chr14 (46263587-46263462)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-254, gnl|bosTau2|chr10 (16370858-16371117)
               

               
               1-254, gnl|Hg17|chr14 (19999430-19999162)
               

               
               1-254, gnl|Mm7|chr14 (46264745-46264510)
               


               
               446-574, gnl|bosTau2|chr10 (16371990-16372117)
               

               
               446-574, gnl|Hg17|chr14 (19998297-19998171)
               

               
               446-574, gnl|Mm7|chr14 (46263587-46263462)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nmm (0.132802)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-102, - strand, RNAz p=0.951119
	137-254, + strand, RNAz p=0.998364

	1-254, gnl\|bosTau2\|chr10 (16370858-16371117)
	1-254, gnl\|Hg17\|chr14 (19999430-19999162)
	1-254, gnl\|Mm7\|chr14 (46264745-46264510)

	446-574, gnl\|bosTau2\|chr10 (16371990-16372117)
	446-574, gnl\|Hg17\|chr14 (19998297-19998171)
	446-574, gnl\|Mm7\|chr14 (46263587-46263462)