Non-Coding RNA Search

Ss1.1-Pig1-11G07.5

Sequence:


               
               GATGACTCCCACAGGCGGGATGGGAGGATGGGCATCTGCTGACCCAGCTTTGGGAAAAGA
AGGTGAGAGTGGTGGCCTCTAGTTTTGAGGTCCCGATGAGAAGTGTGTGTGTGTGTGTGT
TTCAGTTCCTCCCTGTGTATCGCCCCAGCCCAGAGGAGAGCAGGGACCCCACCCTCTATG
CCAACAATGTCCAGAGGGTCATGGCACAGTGAGTGTCCCACAGAGGGTTTCCTAGAGCAG
ATATACAGGGCAGAGGAACCACAGGGGTGGGAGGAGGGGTGAGGTTTTGGAACCAGATAG
GGGAGTGGGGGGAACAGGGGGCTGTTGGACTGCAGTTGGGGAGGGGAGGGTGAAAAGCAC
CTGATAGCTCCCTGGCCAGCAGGCCAGGGTCAGTAATGCATCTCTGCTCCATGCCCCCCT
GTGTCCCTCATGCTGTAGGGCCCTGGGCATTCCAGCCACTGAGTGCGAGTTTGTAGGGAG
CTTACCTGTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGACTCCCACAGGCGGGATGGGAGGATGGGCATCTGCTGACCCAGCTTTGGGAAAAGA
AGGTGAGAGTGGTGGCCTCTAGTTTTGAGGTCCCGATGAGAAGTGTGTGTGTGTGTGTGT
TTCAGTTCCTCCCTGTGTATCGCCCCAGCCCAGAGGAGAGCAGGGACCCCACCCTCTATG
CCAACAATGTCCAGAGGGTCATGGCACAGTGAGTGTCCCACAGAGGGTTTCCTAGAGCAG
ATATACAGGGCAGAGGAACCACAGGGGTGGGAGGAGGGGTGAGGTTTTGGAACCAGATAG
GGGAGTGGGGGGAACAGGGGGCTGTTGGACTGCAGTTGGGGAGGGGAGGGTGAAAAGCAC
CTGATAGCTCCCTGGCCAGCAGGCCAGGGTCAGTAATGCATCTCTGCTCCATGCCCCCCT
GTGTCCCTCATGCTGTAGGGCCCTGGGCATTCCAGCCACTGAGTGCGAGTTTGTAGGGAG
CTTACCTGTGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-217, - strand, RNAz p=0.663197

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-217, - strand, RNAz p=0.663197

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-492, gnl|bosTau2|chr10 (21367734-21367199)
               

               
               2-492, gnl|Hg17|chr15 (32442272-32441761)
               

               
               2-492, gnl|Mm7|chr2 (112094136-112094611)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-492, gnl|bosTau2|chr10 (21367734-21367199)
               

               
               2-492, gnl|Hg17|chr15 (32442272-32441761)
               

               
               2-492, gnl|Mm7|chr2 (112094136-112094611)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fli (0.202881)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)

	2-492, gnl\|bosTau2\|chr10 (21367734-21367199)
	2-492, gnl\|Hg17\|chr15 (32442272-32441761)
	2-492, gnl\|Mm7\|chr2 (112094136-112094611)