Non-Coding RNA Search

Ss1.1-Pig1-11M10.5

Sequence:


               
               CCGTGTCTGCCGTGCAGAACTACATCAAAGAAGCCCTGATAGTCATAGATAAATCCTGTA
TGAATCCTGGAGACCAGAGCCCGGCGGATTCTAGCAAAACCCTGGAGAAGCTGGAGAAGC
ACAGGAAGTAAAAGGAGCCTGAACGAAGGGCGCTAGCGTCTGGAAGGGAAAGGACTCCAC
ATCCGTTTGCCACCAGGACAGCCTGGATCCCCTCCTGCCCGGGGGACAGAGTGCACTGCT
CACGTTCCGGTTGAAAAGGCCTCCGTCGGTTTCCAGATCTACACGTGCCCTCCTGGATTT
CCTAGTATTTCTCTAGCGCTGACGCCTCTCCGAAACCCTGGACTGGACGAGGTTGAAGGT
GACCAGTGTTGGTTCTTGACCCATTCTGCTTAGATTTTTTTTTTTTTTTTTTTTTTTTGG
AACCCTGTTCTTCCTTCCTCTGCAAGTGGTGCTACAAGTTTTTCAAACTTTTAGATTTCC
CGGGCTGAGGAAGACACACACACACACACACACACACACATACACACACACACACTCAGC
TGTTGAGATATCAGTTGTGATTCAGATCAACAGTCACTTGCAGTGTTAAGGTGAACGTAC
TGATGAAGCTTCCTTAGACTCTCACACACTGGGAGGCAAGGGTTGTACCCGCTTAGCAAC
CGGTTCATAGGTGGTATTTGACACCACCTTAAACCCTTGCTCAAGGGGCCCTTCGGGTAT
TAACGAAACTTGTAGAAACAAAGCCTGCTGATGATTTTATGTTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTGTCTGCCGTGCAGAACTACATCAAAGAAGCCCTGATAGTCATAGATAAATCCTGTA
TGAATCCTGGAGACCAGAGCCCGGCGGATTCTAGCAAAACCCTGGAGAAGCTGGAGAAGC
ACAGGAAGTAAAAGGAGCCTGAACGAAGGGCGCTAGCGTCTGGAAGGGAAAGGACTCCAC
ATCCGTTTGCCACCAGGACAGCCTGGATCCCCTCCTGCCCGGGGGACAGAGTGCACTGCT
CACGTTCCGGTTGAAAAGGCCTCCGTCGGTTTCCAGATCTACACGTGCCCTCCTGGATTT
CCTAGTATTTCTCTAGCGCTGACGCCTCTCCGAAACCCTGGACTGGACGAGGTTGAAGGT
GACCAGTGTTGGTTCTTGACCCATTCTGCTTAGATTTTTTTTTTTTTTTTTTTTTTTTGG
AACCCTGTTCTTCCTTCCTCTGCAAGTGGTGCTACAAGTTTTTCAAACTTTTAGATTTCC
CGGGCTGAGGAAGACACACACACACACACACACACACACATACACACACACACACTCAGC
TGTTGAGATATCAGTTGTGATTCAGATCAACAGTCACTTGCAGTGTTAAGGTGAACGTAC
TGATGAAGCTTCCTTAGACTCTCACACACTGGGAGGCAAGGGTTGTACCCGCTTAGCAAC
CGGTTCATAGGTGGTATTTGACACCACCTTAAACCCTTGCTCAAGGGGCCCTTCGGGTAT
TAACGAAACTTGTAGAAACAAAGCCTGCTGATGATTTTATGTTTTTCT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               3-508, gnl|bosTau2|chr13 (40766527-40766035)
               

               
               3-508, gnl|Hg17|chr20 (54646348-54646827)
               

               
               3-508, gnl|Mm7|chr2 (172349902-172350362)
               


               
               518-766, gnl|bosTau2|chr13 (40766055-40765801)
               

               
               518-766, gnl|Hg17|chr20 (54646811-54647138)
               

               
               518-766, gnl|Mm7|chr2 (172350344-172350683)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-508, gnl|bosTau2|chr13 (40766527-40766035)
               

               
               3-508, gnl|Hg17|chr20 (54646348-54646827)
               

               
               3-508, gnl|Mm7|chr2 (172349902-172350362)
               


               
               518-766, gnl|bosTau2|chr13 (40766055-40765801)
               

               
               518-766, gnl|Hg17|chr20 (54646811-54647138)
               

               
               518-766, gnl|Mm7|chr2 (172350344-172350683)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               mcp (0.341297)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)

	3-508, gnl\|bosTau2\|chr13 (40766527-40766035)
	3-508, gnl\|Hg17\|chr20 (54646348-54646827)
	3-508, gnl\|Mm7\|chr2 (172349902-172350362)

	518-766, gnl\|bosTau2\|chr13 (40766055-40765801)
	518-766, gnl\|Hg17\|chr20 (54646811-54647138)
	518-766, gnl\|Mm7\|chr2 (172350344-172350683)