Non-Coding RNA Search

Ss1.1-Pig1-120E18.5

Sequence:


               
               GTTCGAGGAGGGGCTGGTAGACCGATGCCCTGCGCCGGGACCCCATCCCGCTCTGGTGGA
AGGTCGGAGGAGCAGCGTCAAAGTGGAGGCTGAGGCCAGCCGGCAGTGAGGGCGGGACTG
CTGTCCTCAGACCGCGGGGCCTGGGCTCCCGGGTCACACAACCCCTCGACTCCGCGTCCC
TGGCACCTAGTCACAGCCCTGGATCCTTCCGCTGCCCTTCTCCTGCCTCCCCACCGGCCC
CATGGGCATAGAACTATGGGGCTTCAAGCAATAACGAGCAGGGGCCTGGCGAGAGGACAC
AAGGAGGGTGCGTGGTGCCCCCCTCACCGTTGCCCAGAGCAAGGGGCAAGGACTCTGCCT
CCAGGGCACTTGGGGTTCTCCCCTTCCTTACACAGCACACTCCCATTCTCTAGTTTGAAC
CAGTGGTGTGAGCAGTTGGACTCGGTTTGGACATGGGGGAAAGGGGGACTATCCTGGGAG
GGTCCAGCAACTAAAAGTGGAAACATTTCCCCCCCAGAACTGGGGGCCTGGGAACACTGG
ACCTGATCCTCCCTCCATTCCCCCATTTTTGTGCTTCTAGTTTGTTTCTTTAATTTAACA
AGTGCTGCAGTTTGCCTACCCATCCCCATCCTTCTCCCAAGTCCTCAGCGGTTCTCTCCC
TCCTGCCCTCTCTAGGGGGGCATGGGGTCCCCTTCACCAGCCCCCTCAGGAGGCTTGGGT
GGACTCAGGGTCTCCCTTAGCTGGGGGCTGGGCCGCAGCACCTGTCTGAGCAGTTAGAGC
ATCTTTCTTTTCAGATCGTGTACAGTAGATTATTTATTTTGTTATTTTGGAATAAAATTT
ATTTTATGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCGAGGAGGGGCTGGTAGACCGATGCCCTGCGCCGGGACCCCATCCCGCTCTGGTGGA
AGGTCGGAGGAGCAGCGTCAAAGTGGAGGCTGAGGCCAGCCGGCAGTGAGGGCGGGACTG
CTGTCCTCAGACCGCGGGGCCTGGGCTCCCGGGTCACACAACCCCTCGACTCCGCGTCCC
TGGCACCTAGTCACAGCCCTGGATCCTTCCGCTGCCCTTCTCCTGCCTCCCCACCGGCCC
CATGGGCATAGAACTATGGGGCTTCAAGCAATAACGAGCAGGGGCCTGGCGAGAGGACAC
AAGGAGGGTGCGTGGTGCCCCCCTCACCGTTGCCCAGAGCAAGGGGCAAGGACTCTGCCT
CCAGGGCACTTGGGGTTCTCCCCTTCCTTACACAGCACACTCCCATTCTCTAGTTTGAAC
CAGTGGTGTGAGCAGTTGGACTCGGTTTGGACATGGGGGAAAGGGGGACTATCCTGGGAG
GGTCCAGCAACTAAAAGTGGAAACATTTCCCCCCCAGAACTGGGGGCCTGGGAACACTGG
ACCTGATCCTCCCTCCATTCCCCCATTTTTGTGCTTCTAGTTTGTTTCTTTAATTTAACA
AGTGCTGCAGTTTGCCTACCCATCCCCATCCTTCTCCCAAGTCCTCAGCGGTTCTCTCCC
TCCTGCCCTCTCTAGGGGGGCATGGGGTCCCCTTCACCAGCCCCCTCAGGAGGCTTGGGT
GGACTCAGGGTCTCCCTTAGCTGGGGGCTGGGCCGCAGCACCTGTCTGAGCAGTTAGAGC
ATCTTTCTTTTCAGATCGTGTACAGTAGATTATTTATTTTGTTATTTTGGAATAAAATTT
ATTTTATGGCTT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               160-408, - strand, RNAz p=0.971557
               

               
               472-587, - strand, RNAz p=0.76457
               

               
               624-816, - strand, RNAz p=0.99858

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-408, - strand, RNAz p=0.971557
               

               
               472-587, - strand, RNAz p=0.76457
               

               
               624-816, - strand, RNAz p=0.99858

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               171-309, - strand, RNAmicro p=0.992665
               

               
               741-825, + strand, RNAmicro p=0.921663

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               171-309, - strand, RNAmicro p=0.992665
               

               
               741-825, + strand, RNAmicro p=0.921663

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003153, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003153, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr5 (32586353-32585503)
               

               
               1-852, gnl|Hg17|chr12 (55774663-55775522)
               

               
               1-852, gnl|Mm7|chr10 (127163166-127162310)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr5 (32586353-32585503)
               

               
               1-852, gnl|Hg17|chr12 (55774663-55775522)
               

               
               1-852, gnl|Mm7|chr10 (127163166-127162310)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	160-408, - strand, RNAz p=0.971557
	472-587, - strand, RNAz p=0.76457
	624-816, - strand, RNAz p=0.99858

	171-309, - strand, RNAmicro p=0.992665
	741-825, + strand, RNAmicro p=0.921663

	1-852, gnl\|bosTau2\|chr5 (32586353-32585503)
	1-852, gnl\|Hg17\|chr12 (55774663-55775522)
	1-852, gnl\|Mm7\|chr10 (127163166-127162310)