Ss1.1-Pig1-120H18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTAACTCTCTTCCTTTCTCCAGCATCCATGTCTGCGTTGCAGAACAGTATAAACCAACAA GACATGCAACAGTCTCCTCTTTATTCCTCTCAGAACAACATACCTGGAATCCAAGGAGCC ACATCTTCACCTCAGCCACAGGCTACTTTATTTCACAACACTACAGGAGGTACAATGAAC CAGCTACAGAATTCTCCTGGCTCTTCTCAGCAGACTTCAGGAATGTTCTTATTTGGCATT CAAAATAATTGCAATCCACTTTTAACTTCTGGACCAGCTACATTACCAGATCAGTTAATG GCCATAAGTCAGCCAGGCCAACCACAAAATGAGAACCAGCCACCTGTCACAACACTTCTT TCTCAGCAAATGCCAGAGAATTCTCCGCTGACATCCTCTCTGAACACCAACCAGAACATT GAAAAGATCGATTTGCTTGTTTCATTGCAAAACCAAGGGAACAACCTGACTGGCTCCTTT TAACTGGATATAAATTCCATGAAGAAATCCTGATTTCAAGATATCCTGAGATCTTGTGAT TCCATGAGGATTATCGAACTGTTACTTTAAAAACAAAACAAAATATGAAAAACTGTGACT GAGTAAATGGATAGATTTTACTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTAACTCTCTTCCTTTCTCCAGCATCCATGTCTGCGTTGCAGAACAGTATAAACCAACAA GACATGCAACAGTCTCCTCTTTATTCCTCTCAGAACAACATACCTGGAATCCAAGGAGCC ACATCTTCACCTCAGCCACAGGCTACTTTATTTCACAACACTACAGGAGGTACAATGAAC CAGCTACAGAATTCTCCTGGCTCTTCTCAGCAGACTTCAGGAATGTTCTTATTTGGCATT CAAAATAATTGCAATCCACTTTTAACTTCTGGACCAGCTACATTACCAGATCAGTTAATG GCCATAAGTCAGCCAGGCCAACCACAAAATGAGAACCAGCCACCTGTCACAACACTTCTT TCTCAGCAAATGCCAGAGAATTCTCCGCTGACATCCTCTCTGAACACCAACCAGAACATT GAAAAGATCGATTTGCTTGTTTCATTGCAAAACCAAGGGAACAACCTGACTGGCTCCTTT TAACTGGATATAAATTCCATGAAGAAATCCTGATTTCAAGATATCCTGAGATCTTGTGAT TCCATGAGGATTATCGAACTGTTACTTTAAAAACAAAACAAAATATGAAAAACTGTGACT GAGTAAATGGATAGATTTTACTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-119, - strand, RNAz p=0.617123 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, - strand, RNAz p=0.617123 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-269, gnl|bosTau2|chr18 (30311077-30311345) | |
| 1-269, gnl|canFam2|chr5 (83011058-83010541) | |
| 1-269, gnl|dasNov1|scaffold_71764 (6001-5480) | |
| 1-269, gnl|echTel1|scaffold_284677 (12617-12104) | |
| 1-269, gnl|galGal2|chr11_random (215123-215623) | |
| 1-269, gnl|hg17|chr16 (68285149-68285662) | |
| 1-269, gnl|Hg17|chr16 (68285397-68285661) | |
| 1-269, gnl|loxAfr1|scaffold_7960 (34497-35015) | |
| 1-269, gnl|mm7|chr8 (105969200-105969713) | |
| 1-269, gnl|Mm7|chr8 (105969448-105969712) | |
| 1-269, gnl|monDom2|scaffold_23 (4494464-4493939) | |
| 1-269, gnl|oryCun1|scaffold_202257 (91227-90710) | |
| 1-269, gnl|panTro1|chr18 (62634754-62635267) | |
| 1-269, gnl|rheMac2|chr20 (68077256-68077769) | |
| 1-269, gnl|rn3|chr19 (37236712-37237225) | |
| 1-269, gnl|xenTro1|scaffold_578 (405478-405925) | |
| 489-624, gnl|bosTau2|chr18 (30312662-30312797) | |
| 489-624, gnl|canFam2|chr5 (83009250-83009111) | |
| 489-624, gnl|dasNov1|scaffold_71764 (4337-4206) | |
| 489-624, gnl|echTel1|scaffold_284677 (10947-10836) | |
| 489-624, gnl|galGal2|chr11_random (217113-217253) | |
| 489-624, gnl|hg17|chr16 (68287737-68287866) | |
| 489-624, gnl|Hg17|chr16 (68287761-68287889) | |
| 489-624, gnl|loxAfr1|scaffold_7960 (37089-37218) | |
| 489-624, gnl|mm7|chr8 (105971273-105971395) | |
| 489-624, gnl|Mm7|chr8 (105971298-105971415) | |
| 489-624, gnl|monDom2|scaffold_23 (4489361-4489218) | |
| 489-624, gnl|oryCun1|scaffold_202257 (88385-88244) | |
| 489-624, gnl|panTro1|chr18 (62637344-62637473) | |
| 489-624, gnl|rheMac2|chr20 (68080108-68080237) | |
| 489-624, gnl|rn3|chr19 (37238945-37239061) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-269, gnl|bosTau2|chr18 (30311077-30311345) | |
| 1-269, gnl|canFam2|chr5 (83011058-83010541) | |
| 1-269, gnl|dasNov1|scaffold_71764 (6001-5480) | |
| 1-269, gnl|echTel1|scaffold_284677 (12617-12104) | |
| 1-269, gnl|galGal2|chr11_random (215123-215623) | |
| 1-269, gnl|hg17|chr16 (68285149-68285662) | |
| 1-269, gnl|Hg17|chr16 (68285397-68285661) | |
| 1-269, gnl|loxAfr1|scaffold_7960 (34497-35015) | |
| 1-269, gnl|mm7|chr8 (105969200-105969713) | |
| 1-269, gnl|Mm7|chr8 (105969448-105969712) | |
| 1-269, gnl|monDom2|scaffold_23 (4494464-4493939) | |
| 1-269, gnl|oryCun1|scaffold_202257 (91227-90710) | |
| 1-269, gnl|panTro1|chr18 (62634754-62635267) | |
| 1-269, gnl|rheMac2|chr20 (68077256-68077769) | |
| 1-269, gnl|rn3|chr19 (37236712-37237225) | |
| 1-269, gnl|xenTro1|scaffold_578 (405478-405925) | |
| 489-624, gnl|bosTau2|chr18 (30312662-30312797) | |
| 489-624, gnl|canFam2|chr5 (83009250-83009111) | |
| 489-624, gnl|dasNov1|scaffold_71764 (4337-4206) | |
| 489-624, gnl|echTel1|scaffold_284677 (10947-10836) | |
| 489-624, gnl|galGal2|chr11_random (217113-217253) | |
| 489-624, gnl|hg17|chr16 (68287737-68287866) | |
| 489-624, gnl|Hg17|chr16 (68287761-68287889) | |
| 489-624, gnl|loxAfr1|scaffold_7960 (37089-37218) | |
| 489-624, gnl|mm7|chr8 (105971273-105971395) | |
| 489-624, gnl|Mm7|chr8 (105971298-105971415) | |
| 489-624, gnl|monDom2|scaffold_23 (4489361-4489218) | |
| 489-624, gnl|oryCun1|scaffold_202257 (88385-88244) | |
| 489-624, gnl|panTro1|chr18 (62637344-62637473) | |
| 489-624, gnl|rheMac2|chr20 (68080108-68080237) | |
| 489-624, gnl|rn3|chr19 (37238945-37239061) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cki (0.165235) | |
| liv (0.146284) | |
| hlv (0.139256) | |
| bla (0.124347) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) | |
| liv (0.146284) | |
| hlv (0.139256) | |
| bla (0.124347) | |
| cty (0.10408) |