Ss1.1-Pig1-120I08.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTCAAACATCAGATTTATTTTTAAAATGTGCACATTAGAGTTTTACATACATAC AAAATGTTTGTGTCCCTGGCAAGTAGGAAATTTCACTGACATTCCCATGTCAAGTAGCTT CTTTCTAATCAAAATCCTTCCATTAAAAATAAATATACATTTAAATTATCGAGCTACTAT GTTCATTAGTCTCAATATTCACAACTTTAGGAAAGAGAATTGAACCTCTGCCTAAAGGGA GCGTCTGGTTCTGAGCAGCACGTGAGGCTGAGTTCCCGCTTTGGCACACGGGCCGCAGGG CCCCGGGCCACCTTGGCACATCCTCCCCCGACCACGACAGGCCTGTGCACACCTTGTCCC TCCAACTGCAACATTGCTATGACCCTGAATGCCACCATCACCCTCAGGCGGGTTCTAGAA AGTAAGCAAGGCGCCATCCCAGTTCCGCCCAAAGAAACTTACTTCTGGGGAGAAAAAGAC ACTGGCTGTGAACCAAAAGGCCGTTTAAGGACTGGTCCGAAGTATTTCCCTTTGGATCCT GCGTCAGGCTGCCCAGGGACCTCAGTAACGCAGGCACACGCCCAGGAAGACAAGCCGGCT TTAAAACACAAAGGCTTCCAGGGCTGAGAAAGCGTCAAACAAGAAACCTCTGGGAGCAGC TCAGGAGCCAGTCCCTGCTCTGAGGGCCTGCGGCCCGCGCCCCCCACGGACAGTGACCAG AAGCTGACAGTCCCCCCCACGCTGCTGGTGTCACACCAGCATCCGTGTCGTAGGACACAC CACGTGGTCGGCTGCACTTAGTAAACACCCTAAGTGGGTGGAAGAGAAAGAGGCAGAGTG GAAAGACTGGTACAGCATCGCGGTCTCCCTCACACACACACTCACACACACACGCGCACA CACACGCGCACTCACACACACACTCACACACACGCGCGCACACACGCACGCACACACTCA CACACACACGCGCACACACACGCACGCACAGGTACAGCATCGTGGTCTCCCCCACACACA CACTCACACACGTACGTCTGAGCTTGTGAGACAAACCAACAGCCACAAAGGATCTCAGGA AGTGTCCCTGCCACAGTGTCTGTCTTTGTTTACATTTTCAGGGGCGAATTTACTTCTAAA TGTTTTGGGTTTTACAAATGATGTGTTAAAACCATTAAATGTTAGAAAACCAATCCTTGA AGCCTGAGGACCTGGCCTGGAACCAGGACACCTGGTGGAACAGCTTCAGGCAAATGCGGT TTGGCCTTAGGGCGCCACCGCCGCCCTGCCGCTGAGCCCTGGGCTCCTGCTGTGCCGCGT GGGTGCTGGAGGGGGAAGACACGGGCCCCCTCGGAGGCCCCTGCCAGCCCCTCACGTGGG GGACCCCATCTCTCAGGGCCTCCAGCAGGTCTGCCCAGCCCACAGGCAGGCAGAGGGGAC TCGGAGCCGCCTGTCACCACGGGAACAAGGAGAACGCCTCTGGAGCCCGAGGGGCAGCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTCAAACATCAGATTTATTTTTAAAATGTGCACATTAGAGTTTTACATACATAC AAAATGTTTGTGTCCCTGGCAAGTAGGAAATTTCACTGACATTCCCATGTCAAGTAGCTT CTTTCTAATCAAAATCCTTCCATTAAAAATAAATATACATTTAAATTATCGAGCTACTAT GTTCATTAGTCTCAATATTCACAACTTTAGGAAAGAGAATTGAACCTCTGCCTAAAGGGA GCGTCTGGTTCTGAGCAGCACGTGAGGCTGAGTTCCCGCTTTGGCACACGGGCCGCAGGG CCCCGGGCCACCTTGGCACATCCTCCCCCGACCACGACAGGCCTGTGCACACCTTGTCCC TCCAACTGCAACATTGCTATGACCCTGAATGCCACCATCACCCTCAGGCGGGTTCTAGAA AGTAAGCAAGGCGCCATCCCAGTTCCGCCCAAAGAAACTTACTTCTGGGGAGAAAAAGAC ACTGGCTGTGAACCAAAAGGCCGTTTAAGGACTGGTCCGAAGTATTTCCCTTTGGATCCT GCGTCAGGCTGCCCAGGGACCTCAGTAACGCAGGCACACGCCCAGGAAGACAAGCCGGCT TTAAAACACAAAGGCTTCCAGGGCTGAGAAAGCGTCAAACAAGAAACCTCTGGGAGCAGC TCAGGAGCCAGTCCCTGCTCTGAGGGCCTGCGGCCCGCGCCCCCCACGGACAGTGACCAG AAGCTGACAGTCCCCCCCACGCTGCTGGTGTCACACCAGCATCCGTGTCGTAGGACACAC CACGTGGTCGGCTGCACTTAGTAAACACCCTAAGTGGGTGGAAGAGAAAGAGGCAGAGTG GAAAGACTGGTACAGCATCGCGGTCTCCCTCACACACACACTCACACACACACGCGCACA CACACGCGCACTCACACACACACTCACACACACGCGCGCACACACGCACGCACACACTCA CACACACACGCGCACACACACGCACGCACAGGTACAGCATCGTGGTCTCCCCCACACACA CACTCACACACGTACGTCTGAGCTTGTGAGACAAACCAACAGCCACAAAGGATCTCAGGA AGTGTCCCTGCCACAGTGTCTGTCTTTGTTTACATTTTCAGGGGCGAATTTACTTCTAAA TGTTTTGGGTTTTACAAATGATGTGTTAAAACCATTAAATGTTAGAAAACCAATCCTTGA AGCCTGAGGACCTGGCCTGGAACCAGGACACCTGGTGGAACAGCTTCAGGCAAATGCGGT TTGGCCTTAGGGCGCCACCGCCGCCCTGCCGCTGAGCCCTGGGCTCCTGCTGTGCCGCGT GGGTGCTGGAGGGGGAAGACACGGGCCCCCTCGGAGGCCCCTGCCAGCCCCTCACGTGGG GGACCCCATCTCTCAGGGCCTCCAGCAGGTCTGCCCAGCCCACAGGCAGGCAGAGGGGAC TCGGAGCCGCCTGTCACCACGGGAACAAGGAGAACGCCTCTGGAGCCCGAGGGGCAGCAC |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 3-265, gnl|bosTau2|chr28 (12822659-12822393) | |
| 3-265, gnl|canFam2|chr9 (52577945-52577681) | |
| 3-265, gnl|canFam2|chr9 (52577946-52577711) | |
| 3-265, gnl|canFam2|chr9 (52577939-52577740) | |
| 3-265, gnl|echTel1|scaffold_255919 (3236-3474) | |
| 3-265, gnl|echTel1|scaffold_255919 (3231-3465) | |
| 3-265, gnl|hg17|chr2 (135703076-135703354) | |
| 3-265, gnl|hg17|chr9 (136324124-136324373) | |
| 3-265, gnl|hg17|chr9 (130960673-130960858) | |
| 3-265, gnl|Hg17|chr9 (136324124-136324449) | |
| 3-265, gnl|loxAfr1|scaffold_33502 (11177-10903) | |
| 3-265, gnl|loxAfr1|scaffold_33502 (11178-10929) | |
| 3-265, gnl|loxAfr1|scaffold_33502 (11177-10958) | |
| 3-265, gnl|mm7|chr2 (26216443-26216679) | |
| 3-265, gnl|mm7|chr2 (26216435-26216672) | |
| 3-265, gnl|mm7|chr2 (26216437-26216644) | |
| 3-265, gnl|Mm7|chr2 (26216435-26216677) | |
| 3-265, gnl|monDom2|scaffold_1 (191571089-191571336) | |
| 3-265, gnl|panTro1|chr11 (121156246-121156495) | |
| 3-265, gnl|panTro1|chr11 (115838290-115838475) | |
| 3-265, gnl|panTro1|chr13 (24693258-24693537) | |
| 3-265, gnl|rheMac2|chr13 (117045101-117044824) | |
| 3-265, gnl|rheMac2|chr15 (2098086-2097837) | |
| 3-265, gnl|rheMac2|chr15 (7700218-7700033) | |
| 3-265, gnl|rn3|chr3 (4389929-4390191) | |
| 3-265, gnl|rn3|chr3 (4389921-4390161) | |
| 1046-1345, gnl|bosTau2|chr28 (12821819-12821520) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-265, gnl|bosTau2|chr28 (12822659-12822393) | |
| 3-265, gnl|canFam2|chr9 (52577945-52577681) | |
| 3-265, gnl|canFam2|chr9 (52577946-52577711) | |
| 3-265, gnl|canFam2|chr9 (52577939-52577740) | |
| 3-265, gnl|echTel1|scaffold_255919 (3236-3474) | |
| 3-265, gnl|echTel1|scaffold_255919 (3231-3465) | |
| 3-265, gnl|hg17|chr2 (135703076-135703354) | |
| 3-265, gnl|hg17|chr9 (136324124-136324373) | |
| 3-265, gnl|hg17|chr9 (130960673-130960858) | |
| 3-265, gnl|Hg17|chr9 (136324124-136324449) | |
| 3-265, gnl|loxAfr1|scaffold_33502 (11177-10903) | |
| 3-265, gnl|loxAfr1|scaffold_33502 (11178-10929) | |
| 3-265, gnl|loxAfr1|scaffold_33502 (11177-10958) | |
| 3-265, gnl|mm7|chr2 (26216443-26216679) | |
| 3-265, gnl|mm7|chr2 (26216435-26216672) | |
| 3-265, gnl|mm7|chr2 (26216437-26216644) | |
| 3-265, gnl|Mm7|chr2 (26216435-26216677) | |
| 3-265, gnl|monDom2|scaffold_1 (191571089-191571336) | |
| 3-265, gnl|panTro1|chr11 (121156246-121156495) | |
| 3-265, gnl|panTro1|chr11 (115838290-115838475) | |
| 3-265, gnl|panTro1|chr13 (24693258-24693537) | |
| 3-265, gnl|rheMac2|chr13 (117045101-117044824) | |
| 3-265, gnl|rheMac2|chr15 (2098086-2097837) | |
| 3-265, gnl|rheMac2|chr15 (7700218-7700033) | |
| 3-265, gnl|rn3|chr3 (4389929-4390191) | |
| 3-265, gnl|rn3|chr3 (4389921-4390161) | |
| 1046-1345, gnl|bosTau2|chr28 (12821819-12821520) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| ill (0.526778) | |
| ece (0.229305) | |
| tes (0.207814) | |
| sto (0.179824) | |
| fty (0.17584) | |
| cki (0.165235) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.526778) | |
| ece (0.229305) | |
| tes (0.207814) | |
| sto (0.179824) | |
| fty (0.17584) | |
| cki (0.165235) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |