Non-Coding RNA Search

Ss1.1-Pig1-121M12.5

Sequence:


               
               CACAACAACCTGAACAGCCTGCCGCAGGAGCCGTACCGGTTCAGCGACTCTGCGCAGCGA
GCCATGAGAAAGGCCTTCACCCTGCGCTACACACTGCTGCCCTACCTCTACACGCTGTTC
CACGGGGCCCACGTCAGGGGCGAGACTGTGGCCAGGCCCCTCTTCCTGGAGTTCCCCGAG
GACCCCCGCACCTGGACTGTGGACCGACAGCTCCTGTGGGGGGAGGCTCTGCTTGTCACC
CCGGTGCTCGAGGCTGGGCAGGTCCAGGTCACTGGCTACTTTCCGTGTGGCACGTGGTAC
GACCTGCAGACAGTGCCAGTGGAATCCTCTGGCAGCCTTCCGCCTCCGTCTCCTGCACCC
CTCCCACCTGCCATCCACAGCAAGGGACAGTGGGTGACGCTGCCCGCCCCACTGGACACC
ATCAGCCTCCACCTCCGGGCCGGGTGCATCATCCCCATGCAGGGCCCTGGACTCACGACC
ACAGAATCCCGTAAGCAGCCCATGGCCCTGGCTGTGGCCCTGACCACGAGTGGAAAGGCC
CAAGGGGAGCTGTTCTGGGACGACGGGGAGAGCCTGGGAGTGCTGGACCGTGGGGCCTAC
ACGCAGGTCGTCTTCCTGGCCCAAAATAACACCATCGTGAACGAGCTGGTGCACCTGAGC
AGTGAGGGGGCCGACCTGCAGCTGAGGAGGGTGACGGTCCTGGGGGTGGCCACAGCCCCC
CAAAACGTCCTCTCCAACGGTGTTCCTGTCTCCAACTTCACCTACAGCGCCGACACAGAG
ACCCTGGACATCCCTGTCTCGCTGAGGATGGGAGAGCAGTTTCTCATCAGCTGGTCTTAA
GCCGGGGCCGGGGGGTGCGGCTCCCTCACGGCCTCCCAGCCGCCCAGCTCCCGCACCCTC
AGCTGTGTGTGCGCCGTGGGCCAGGAGCACTTTCCCCGTGTCGCATGGCGCTGACATCCC
TGAACACCCGGATCTGCTCGTGAGTCTGCCTCCTGGGCTCTGAGGCGCCTGCCCAGACCG
CAGGCGGGCCAGTGCCCCGCGGGGCACGCTGTGCTTGGAATGTTTACTGGAAGGTCTGCC
GCTCCCGTCACCGTGGTGCGTGCCCACCCTGGGCAGCTCTCTGCTTCTCCAGGAGCACAG
AGCTAGGGGCTGCTGCCCCAAGGACAGGTGGGGGCTGGCACCAGTCTGAAAGAGTAGGGT
CAGGAACTCGGCAGAAGCACAGGACTTGGGGATGCCTTAACCTGAAGTGCAATTGTTTTA
AGTCACGCTTCTGCTGGTCCTTCTGGGTTCAGGGCCAGGAGGATGTGGCCGAGGCCACGC
AGGGAATTTGACGTAAATGCAGTCACGCGGCATGTGTTCTTTTCTAGTAGTATGCGTCGT
TACGACTTTGAGATTCACTTGTGCTGCGTGTGCTTTTGCATTACCAGTGTTCCACTGTGC
AGATGTGCCACGTTCATCGAATTTAATGGCCATCGGGACTGTCTTTGGCTTTTGGCTGTT
ATGAATAAAGACGTGAGCAATCCTGAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAACAACCTGAACAGCCTGCCGCAGGAGCCGTACCGGTTCAGCGACTCTGCGCAGCGA
GCCATGAGAAAGGCCTTCACCCTGCGCTACACACTGCTGCCCTACCTCTACACGCTGTTC
CACGGGGCCCACGTCAGGGGCGAGACTGTGGCCAGGCCCCTCTTCCTGGAGTTCCCCGAG
GACCCCCGCACCTGGACTGTGGACCGACAGCTCCTGTGGGGGGAGGCTCTGCTTGTCACC
CCGGTGCTCGAGGCTGGGCAGGTCCAGGTCACTGGCTACTTTCCGTGTGGCACGTGGTAC
GACCTGCAGACAGTGCCAGTGGAATCCTCTGGCAGCCTTCCGCCTCCGTCTCCTGCACCC
CTCCCACCTGCCATCCACAGCAAGGGACAGTGGGTGACGCTGCCCGCCCCACTGGACACC
ATCAGCCTCCACCTCCGGGCCGGGTGCATCATCCCCATGCAGGGCCCTGGACTCACGACC
ACAGAATCCCGTAAGCAGCCCATGGCCCTGGCTGTGGCCCTGACCACGAGTGGAAAGGCC
CAAGGGGAGCTGTTCTGGGACGACGGGGAGAGCCTGGGAGTGCTGGACCGTGGGGCCTAC
ACGCAGGTCGTCTTCCTGGCCCAAAATAACACCATCGTGAACGAGCTGGTGCACCTGAGC
AGTGAGGGGGCCGACCTGCAGCTGAGGAGGGTGACGGTCCTGGGGGTGGCCACAGCCCCC
CAAAACGTCCTCTCCAACGGTGTTCCTGTCTCCAACTTCACCTACAGCGCCGACACAGAG
ACCCTGGACATCCCTGTCTCGCTGAGGATGGGAGAGCAGTTTCTCATCAGCTGGTCTTAA
GCCGGGGCCGGGGGGTGCGGCTCCCTCACGGCCTCCCAGCCGCCCAGCTCCCGCACCCTC
AGCTGTGTGTGCGCCGTGGGCCAGGAGCACTTTCCCCGTGTCGCATGGCGCTGACATCCC
TGAACACCCGGATCTGCTCGTGAGTCTGCCTCCTGGGCTCTGAGGCGCCTGCCCAGACCG
CAGGCGGGCCAGTGCCCCGCGGGGCACGCTGTGCTTGGAATGTTTACTGGAAGGTCTGCC
GCTCCCGTCACCGTGGTGCGTGCCCACCCTGGGCAGCTCTCTGCTTCTCCAGGAGCACAG
AGCTAGGGGCTGCTGCCCCAAGGACAGGTGGGGGCTGGCACCAGTCTGAAAGAGTAGGGT
CAGGAACTCGGCAGAAGCACAGGACTTGGGGATGCCTTAACCTGAAGTGCAATTGTTTTA
AGTCACGCTTCTGCTGGTCCTTCTGGGTTCAGGGCCAGGAGGATGTGGCCGAGGCCACGC
AGGGAATTTGACGTAAATGCAGTCACGCGGCATGTGTTCTTTTCTAGTAGTATGCGTCGT
TACGACTTTGAGATTCACTTGTGCTGCGTGTGCTTTTGCATTACCAGTGTTCCACTGTGC
AGATGTGCCACGTTCATCGAATTTAATGGCCATCGGGACTGTCTTTGGCTTTTGGCTGTT
ATGAATAAAGACGTGAGCAATCCTGAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               21-172, gnl|bosTau2|chr19 (47219177-47219328)
               

               
               21-172, gnl|Hg17|chr17 (75701611-75701762)
               

               
               21-172, gnl|Mm7|chr11 (119390157-119390308)
               


               
               460-626, gnl|bosTau2|chr19 (47221623-47221789)
               

               
               460-626, gnl|Hg17|chr17 (75706584-75706750)
               

               
               460-626, gnl|Mm7|chr11 (119393101-119393267)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-172, gnl|bosTau2|chr19 (47219177-47219328)
               

               
               21-172, gnl|Hg17|chr17 (75701611-75701762)
               

               
               21-172, gnl|Mm7|chr11 (119390157-119390308)
               


               
               460-626, gnl|bosTau2|chr19 (47221623-47221789)
               

               
               460-626, gnl|Hg17|chr17 (75706584-75706750)
               

               
               460-626, gnl|Mm7|chr11 (119393101-119393267)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               cli (0.458435)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.458435)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	21-172, gnl\|bosTau2\|chr19 (47219177-47219328)
	21-172, gnl\|Hg17\|chr17 (75701611-75701762)
	21-172, gnl\|Mm7\|chr11 (119390157-119390308)

	460-626, gnl\|bosTau2\|chr19 (47221623-47221789)
	460-626, gnl\|Hg17\|chr17 (75706584-75706750)
	460-626, gnl\|Mm7\|chr11 (119393101-119393267)

	cli (0.458435)
	fce (0.271592)
	cov (0.264306)
	med (0.232504)
	nep (0.183925)
	pty (0.142714)
	ova (0.129132)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	eje (0.0988338)