Non-Coding RNA Search

Ss1.1-Pig1-121P15.5

Sequence:


               
               CATCTCTGCCATAGAACAGGACATCCTGGTGAAGGGGACCATCCTCAAGTACAGTGGTTC
CATCGCCACCCTGGAGCGGCTGCAGAGCTTCCGGCCCCTGCCAGAGCCTCTGACTGTGCA
GCTCCTAACAGTCCCTGGGGAGGTCTTTCCCCCCAAAGTCAAATATACCTTCTTTGTCCC
AAATGACGTGAACTTCAGCATACAGAGCAGCAAAGAGAGAGCGACCACCAACGTCATCCA
GCCTCTGCTCAACGCGCAGTGGGTCCTGGGGGACTGGTCTGAGTGCTCCAGCAGCTGCGG
GGCTGGCTGGCAACGGCGGGCTGTGGAATGCCTCGATCCCAGCGGCCAGGCCTCCACCAC
CTGCGATGAGGCCCTGAAGCCTGAGGATGCCAAGCCCTGTGGAAGCCAGCCCTGCCCCCT
GTGATCCAGTGGGTGGGCCAAGCTCGTGCTCATGGACTTGGGGTGTGGGAGGCAGACAAG
GGTTGCACTGCGGTGACCCCACCTCCGGAGGTGGCATGGCCCACCCAGGCCCGGCAGGGC
CCCAGCCCCTCCGGTTGGCATGAATCCATAAGGGGGAGGGAAGGAGAGGAGACACAGCAG
ATGTTAAAGTCTACTACCTAGTGGGTTGAACCTTGTTTGGGTTCAAGTAGAGGGCATAGG
TTAAAAGGTAAAGAGTATACTTATTGACCCAAACAGGAGACTCGGTCAGCCTGTTTGCAA
AGGACTAGCAAAGTTAAATGAAAACATTTTTTCTACTTGGTTCCCTCGATAAATAATCTA
CCTCAGAGGGGAAACAAATTAGTAAGAGATGTGGAGTAGGGTGGATGGTGTGTCAAAGCA
AGCTCTGTAGCTGTGCCCCGAGCGGTCTTCAGAAATGACCTGGACGATCTTGGTATTAAG
CCGTAGCCTGGAGGGCTGCAGGCCCCAGGATCGTGGAGAGCCCTGTGTTCTCAGGCTCCC
ACCTGCTGGGGTGGATCCATGTCAAGTATTTATGCAAATGTGTCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCTCTGCCATAGAACAGGACATCCTGGTGAAGGGGACCATCCTCAAGTACAGTGGTTC
CATCGCCACCCTGGAGCGGCTGCAGAGCTTCCGGCCCCTGCCAGAGCCTCTGACTGTGCA
GCTCCTAACAGTCCCTGGGGAGGTCTTTCCCCCCAAAGTCAAATATACCTTCTTTGTCCC
AAATGACGTGAACTTCAGCATACAGAGCAGCAAAGAGAGAGCGACCACCAACGTCATCCA
GCCTCTGCTCAACGCGCAGTGGGTCCTGGGGGACTGGTCTGAGTGCTCCAGCAGCTGCGG
GGCTGGCTGGCAACGGCGGGCTGTGGAATGCCTCGATCCCAGCGGCCAGGCCTCCACCAC
CTGCGATGAGGCCCTGAAGCCTGAGGATGCCAAGCCCTGTGGAAGCCAGCCCTGCCCCCT
GTGATCCAGTGGGTGGGCCAAGCTCGTGCTCATGGACTTGGGGTGTGGGAGGCAGACAAG
GGTTGCACTGCGGTGACCCCACCTCCGGAGGTGGCATGGCCCACCCAGGCCCGGCAGGGC
CCCAGCCCCTCCGGTTGGCATGAATCCATAAGGGGGAGGGAAGGAGAGGAGACACAGCAG
ATGTTAAAGTCTACTACCTAGTGGGTTGAACCTTGTTTGGGTTCAAGTAGAGGGCATAGG
TTAAAAGGTAAAGAGTATACTTATTGACCCAAACAGGAGACTCGGTCAGCCTGTTTGCAA
AGGACTAGCAAAGTTAAATGAAAACATTTTTTCTACTTGGTTCCCTCGATAAATAATCTA
CCTCAGAGGGGAAACAAATTAGTAAGAGATGTGGAGTAGGGTGGATGGTGTGTCAAAGCA
AGCTCTGTAGCTGTGCCCCGAGCGGTCTTCAGAAATGACCTGGACGATCTTGGTATTAAG
CCGTAGCCTGGAGGGCTGCAGGCCCCAGGATCGTGGAGAGCCCTGTGTTCTCAGGCTCCC
ACCTGCTGGGGTGGATCCATGTCAAGTATTTATGCAAATGTGTCTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13543229|gb|AAH05780.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13543229|gb|AAH05780.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1008, gnl|bosTau2|chr29 (28918366-28919342)
               

               
               1-1008, gnl|Hg17|chr11 (129781086-129780052)
               

               
               1-1008, gnl|Mm7|chr9 (30861353-30862390)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr29 (28918366-28919342)
               

               
               1-1008, gnl|Hg17|chr11 (129781086-129780052)
               

               
               1-1008, gnl|Mm7|chr9 (30861353-30862390)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	1-1008, gnl\|bosTau2\|chr29 (28918366-28919342)
	1-1008, gnl\|Hg17\|chr11 (129781086-129780052)
	1-1008, gnl\|Mm7\|chr9 (30861353-30862390)