Non-Coding RNA Search

Ss1.1-Pig1-122L20.5

Sequence:


               
               TGACCTTTGTCCACAGCATGGATCAAAAAAGGCATGGACAGTGTAAGGTCCTGGGTGTTA
AGCAGTTGGACACGTGGCCATTCATCATCATGATGTGATTTCTAGGCATAGTGATTACCA
TACAAGGTAGCAGAAGTACCTTGTATGGTTTGTTCAGGTGAGCTAGGAGAGGTGTGGGAA
TGTACAGGTCTGCTGAAGCAGCTGACCATGTTGCCGACTGAATAAAGTAAACTTCTGCCT
AGGCCATGGTCTTCCCACTGGGTGTCTGCTGCAGTGTCAGCCTTGCTCCTTGTGTTTCAG
GTGAGATGAGTGAGAGCCGAGCAAAGAGGGTGCGAATCAAGGAGGTGGACGGCTGGACCC
TGAGGATGCTGATTGACTATGTTTACACGGCGGAGATTCAGGTGACGGAAGAGAATGTGC
AGGTAAAGGTGACACCTCATACCACATGGTTGTTTACATATGCCGGTGTTCTAATGCAAA
AGAGCACACCCATACATAGACACTTTATACCAAGGTGATAGACTTTGTTGTTCAAACTGT
ATTTCTAAGACATATTTAAAATTAGTATACCTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACCTTTGTCCACAGCATGGATCAAAAAAGGCATGGACAGTGTAAGGTCCTGGGTGTTA
AGCAGTTGGACACGTGGCCATTCATCATCATGATGTGATTTCTAGGCATAGTGATTACCA
TACAAGGTAGCAGAAGTACCTTGTATGGTTTGTTCAGGTGAGCTAGGAGAGGTGTGGGAA
TGTACAGGTCTGCTGAAGCAGCTGACCATGTTGCCGACTGAATAAAGTAAACTTCTGCCT
AGGCCATGGTCTTCCCACTGGGTGTCTGCTGCAGTGTCAGCCTTGCTCCTTGTGTTTCAG
GTGAGATGAGTGAGAGCCGAGCAAAGAGGGTGCGAATCAAGGAGGTGGACGGCTGGACCC
TGAGGATGCTGATTGACTATGTTTACACGGCGGAGATTCAGGTGACGGAAGAGAATGTGC
AGGTAAAGGTGACACCTCATACCACATGGTTGTTTACATATGCCGGTGTTCTAATGCAAA
AGAGCACACCCATACATAGACACTTTATACCAAGGTGATAGACTTTGTTGTTCAAACTGT
ATTTCTAAGACATATTTAAAATTAGTATACCTTGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               176-274, + strand, RNAz p=0.602179

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-274, + strand, RNAz p=0.602179

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               176-509, gnl|bosTau2|chr17 (2132659-2132318)
               

               
               176-509, gnl|Hg17|chr4 (166517400-166517741)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-509, gnl|bosTau2|chr17 (2132659-2132318)
               

               
               176-509, gnl|Hg17|chr4 (166517400-166517741)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	176-509, gnl\|bosTau2\|chr17 (2132659-2132318)
	176-509, gnl\|Hg17\|chr4 (166517400-166517741)