Ss1.1-Pig1-122N21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCAAGTTCGGGTTATTTGCTGAGCTCAACAACTCCGATTCCGGGCTCTTCACCGTGTT CACAGGGGTCAAAGACTTCAGCAGGATCCACCTTGTAGACAAGTGGAATGGGCTCAGCAA GGTCAACTTCTGGCATTCCGATCAGTGCAACATGATTAATGGAACTTCCGGGCAGATGTG GGCACCATTTATGACTCCTGAATCCTCTCTGGAGTTCTACAGCCCCGAGGCCTGCCGGTC CATGAAGCTCATCTACAAGGAGCAGGGGGTGTTTGAAGGCATCCCCACCTTTCGTTTCGT GGCTCCCAACACCTTATTCGCCAATGGCTCTGTCTACCCACCCAATGAGGGCTTTTGCCC GTGCATGGAGTCTGGAATTCAGAATGTTAGCACCTGCAGGTTCAATGCACCCTTGTTTCT CTCCCATCCTCACTTCTACAATGCTGACCCAGTTCTGGCAGAGGCAGTGTCTGGCCTCCA CCCTAACACAGAAGAGCATTCCTTGTTCCTGGACATTCATCCGGTCACCGGGATCCCTAT GAACTGCTCTGTGAAGCTTCAGCTGAGTCTCTACATTAAGTCTGTGAAAGGCATTGGACA AACCGGGAAGATTGAACCGGTGGTCCTGCCGCTGCTGTGGTTTGCAGAGAGCGGGGCAAT GGAGGGGGAGACCCTTCAGACATTCTACACTCAGCTGGTGTTGATGCCCAAGGTGCTGCA CTATGCCCAGTACGTGCTCCTTGCTCTGGGCTGCGTCCTGCTGTTCATCCCCATCGTCTA CCAGATCCGGAGCCAAGAGAAATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCAAGTTCGGGTTATTTGCTGAGCTCAACAACTCCGATTCCGGGCTCTTCACCGTGTT CACAGGGGTCAAAGACTTCAGCAGGATCCACCTTGTAGACAAGTGGAATGGGCTCAGCAA GGTCAACTTCTGGCATTCCGATCAGTGCAACATGATTAATGGAACTTCCGGGCAGATGTG GGCACCATTTATGACTCCTGAATCCTCTCTGGAGTTCTACAGCCCCGAGGCCTGCCGGTC CATGAAGCTCATCTACAAGGAGCAGGGGGTGTTTGAAGGCATCCCCACCTTTCGTTTCGT GGCTCCCAACACCTTATTCGCCAATGGCTCTGTCTACCCACCCAATGAGGGCTTTTGCCC GTGCATGGAGTCTGGAATTCAGAATGTTAGCACCTGCAGGTTCAATGCACCCTTGTTTCT CTCCCATCCTCACTTCTACAATGCTGACCCAGTTCTGGCAGAGGCAGTGTCTGGCCTCCA CCCTAACACAGAAGAGCATTCCTTGTTCCTGGACATTCATCCGGTCACCGGGATCCCTAT GAACTGCTCTGTGAAGCTTCAGCTGAGTCTCTACATTAAGTCTGTGAAAGGCATTGGACA AACCGGGAAGATTGAACCGGTGGTCCTGCCGCTGCTGTGGTTTGCAGAGAGCGGGGCAAT GGAGGGGGAGACCCTTCAGACATTCTACACTCAGCTGGTGTTGATGCCCAAGGTGCTGCA CTATGCCCAGTACGTGCTCCTTGCTCTGGGCTGCGTCCTGCTGTTCATCCCCATCGTCTA CCAGATCCGGAGCCAAGAGAAATG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 231-404, gnl|bosTau2|chr17 (27287677-27287504) | |
| 231-404, gnl|canFam2|chr26 (8110844-8110721) | |
| 231-404, gnl|danRer3|chr10 (38078165-38078288) | |
| 231-404, gnl|dasNov1|scaffold_200085 (3927-4050) | |
| 231-404, gnl|echTel1|scaffold_287356 (7229-7107) | |
| 231-404, gnl|fr1|chrUn (54238822-54238945) | |
| 231-404, gnl|galGal2|chr15 (4490835-4490712) | |
| 231-404, gnl|hg17|chr12 (123817182-123817305) | |
| 231-404, gnl|Hg17|chr12 (123817361-123817187) | |
| 231-404, gnl|loxAfr1|scaffold_23472 (18047-17922) | |
| 231-404, gnl|mm7|chr5 (124528245-124528368) | |
| 231-404, gnl|Mm7|chr5 (124528422-124528250) | |
| 231-404, gnl|monDom2|scaffold_54 (12836093-12835970) | |
| 231-404, gnl|panTro1|chr10 (126896549-126896672) | |
| 231-404, gnl|rheMac2|chr11 (126116725-126116848) | |
| 231-404, gnl|rn3|chr12 (32304880-32304757) | |
| 231-404, gnl|tetNig1|chrUn_random (326508-326385) | |
| 231-404, gnl|xenTro1|scaffold_885 (288432-288555) | |
| 405-525, gnl|bosTau2|chr17 (27280812-27280692) | |
| 405-525, gnl|canFam2|chr26 (8117020-8116877) | |
| 405-525, gnl|danRer3|chr10 (38077140-38077272) | |
| 405-525, gnl|echTel1|scaffold_287356 (14854-14711) | |
| 405-525, gnl|fr1|chrUn (54238618-54238749) | |
| 405-525, gnl|galGal2|chr15 (4491495-4491344) | |
| 405-525, gnl|hg17|chr12 (123809539-123809678) | |
| 405-525, gnl|Hg17|chr12 (123809668-123809548) | |
| 405-525, gnl|loxAfr1|scaffold_23472 (25753-25608) | |
| 405-525, gnl|mm7|chr5 (124523872-124524017) | |
| 405-525, gnl|Mm7|chr5 (124524007-124523887) | |
| 405-525, gnl|monDom2|scaffold_54 (12840892-12840743) | |
| 405-525, gnl|rheMac2|chr11 (126108642-126108785) | |
| 405-525, gnl|rn3|chr12 (32309963-32309818) | |
| 405-525, gnl|tetNig1|chrUn_random (326731-326592) | |
| 405-525, gnl|xenTro1|scaffold_885 (286097-286233) | |
| 648-797, gnl|bosTau2|chr17 (27269673-27269524) | |
| 648-797, gnl|Hg17|chr12 (123795931-123795782) | |
| 648-797, gnl|Mm7|chr5 (124518299-124518150) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 231-404, gnl|bosTau2|chr17 (27287677-27287504) | |
| 231-404, gnl|canFam2|chr26 (8110844-8110721) | |
| 231-404, gnl|danRer3|chr10 (38078165-38078288) | |
| 231-404, gnl|dasNov1|scaffold_200085 (3927-4050) | |
| 231-404, gnl|echTel1|scaffold_287356 (7229-7107) | |
| 231-404, gnl|fr1|chrUn (54238822-54238945) | |
| 231-404, gnl|galGal2|chr15 (4490835-4490712) | |
| 231-404, gnl|hg17|chr12 (123817182-123817305) | |
| 231-404, gnl|Hg17|chr12 (123817361-123817187) | |
| 231-404, gnl|loxAfr1|scaffold_23472 (18047-17922) | |
| 231-404, gnl|mm7|chr5 (124528245-124528368) | |
| 231-404, gnl|Mm7|chr5 (124528422-124528250) | |
| 231-404, gnl|monDom2|scaffold_54 (12836093-12835970) | |
| 231-404, gnl|panTro1|chr10 (126896549-126896672) | |
| 231-404, gnl|rheMac2|chr11 (126116725-126116848) | |
| 231-404, gnl|rn3|chr12 (32304880-32304757) | |
| 231-404, gnl|tetNig1|chrUn_random (326508-326385) | |
| 231-404, gnl|xenTro1|scaffold_885 (288432-288555) | |
| 405-525, gnl|bosTau2|chr17 (27280812-27280692) | |
| 405-525, gnl|canFam2|chr26 (8117020-8116877) | |
| 405-525, gnl|danRer3|chr10 (38077140-38077272) | |
| 405-525, gnl|echTel1|scaffold_287356 (14854-14711) | |
| 405-525, gnl|fr1|chrUn (54238618-54238749) | |
| 405-525, gnl|galGal2|chr15 (4491495-4491344) | |
| 405-525, gnl|hg17|chr12 (123809539-123809678) | |
| 405-525, gnl|Hg17|chr12 (123809668-123809548) | |
| 405-525, gnl|loxAfr1|scaffold_23472 (25753-25608) | |
| 405-525, gnl|mm7|chr5 (124523872-124524017) | |
| 405-525, gnl|Mm7|chr5 (124524007-124523887) | |
| 405-525, gnl|monDom2|scaffold_54 (12840892-12840743) | |
| 405-525, gnl|rheMac2|chr11 (126108642-126108785) | |
| 405-525, gnl|rn3|chr12 (32309963-32309818) | |
| 405-525, gnl|tetNig1|chrUn_random (326731-326592) | |
| 405-525, gnl|xenTro1|scaffold_885 (286097-286233) | |
| 648-797, gnl|bosTau2|chr17 (27269673-27269524) | |
| 648-797, gnl|Hg17|chr12 (123795931-123795782) | |
| 648-797, gnl|Mm7|chr5 (124518299-124518150) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| eep (0.245128) | |
| pla (0.133672) |