Non-Coding RNA Search

Ss1.1-Pig1-123B06.5

Sequence:


               
               GGTACGAGCCCGACTTGGGAGGACCGGTTCCCAGACCTGNTCCACCCTGATCGTGCTGGT
GCCCACCTCCTATGAGTGGTTCGAAGAGTGGCGGGACGAGCCCAAGGGAAGCGGAGCAGC
GACTATGAGACCCTCAAAAGCTCCTTCGTTGAAGCCTCTCTGTCAGTCGTTCTGAAGCTG
TTTCCACAGCTGGAGGGGAAGGTGGACAGTGTGACTGGAGGGTCCCCGCTGACCACTCAG
TTCTACCTGGCAGCTCCCCGGGGTGCCTGCTACGGAGCTGACCACGACTTGAGCCGCCTG
CACCCTCATGTGATGGCCTCCATGAGGGCCCAGAGCCCCATCCCCAACCTCTACCTGACA
GGCCAGGATATCTTCACCTGTGGGTTGATGGGAGCCCTGCAGGGGGCCCTGCTGTGCAGT
GGCGCCATTCTGAAGCGGAACTTGTACTCAGATCTTTGGAAGCTGGGCTCGAAGATCCAG
GCACAGAAGAATAAGAAGAAGAATTAGTCTAGTCAGGGAGGAGTCGGGAATTTGGCCCGT
GCTAGGGCACAGACCCCTGACCTTCCCGAGCTTTTCTGCCTTAGTTCCTTGATCATGCAA
AGATTCTGATTGGTTTCTGATTTCTGAATGGAGGTCTGACATGAAAGTCTAGCAAAGGTC
ACGGTTCTAAAACTGTTTTTTTGGATTTTTTTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTACGAGCCCGACTTGGGAGGACCGGTTCCCAGACCTGNTCCACCCTGATCGTGCTGGT
GCCCACCTCCTATGAGTGGTTCGAAGAGTGGCGGGACGAGCCCAAGGGAAGCGGAGCAGC
GACTATGAGACCCTCAAAAGCTCCTTCGTTGAAGCCTCTCTGTCAGTCGTTCTGAAGCTG
TTTCCACAGCTGGAGGGGAAGGTGGACAGTGTGACTGGAGGGTCCCCGCTGACCACTCAG
TTCTACCTGGCAGCTCCCCGGGGTGCCTGCTACGGAGCTGACCACGACTTGAGCCGCCTG
CACCCTCATGTGATGGCCTCCATGAGGGCCCAGAGCCCCATCCCCAACCTCTACCTGACA
GGCCAGGATATCTTCACCTGTGGGTTGATGGGAGCCCTGCAGGGGGCCCTGCTGTGCAGT
GGCGCCATTCTGAAGCGGAACTTGTACTCAGATCTTTGGAAGCTGGGCTCGAAGATCCAG
GCACAGAAGAATAAGAAGAAGAATTAGTCTAGTCAGGGAGGAGTCGGGAATTTGGCCCGT
GCTAGGGCACAGACCCCTGACCTTCCCGAGCTTTTCTGCCTTAGTTCCTTGATCATGCAA
AGATTCTGATTGGTTTCTGATTTCTGAATGGAGGTCTGACATGAAAGTCTAGCAAAGGTC
ACGGTTCTAAAACTGTTTTTTTGGATTTTTTTGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15029943|gb|AAH11203.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15029943|gb|AAH11203.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               27-203, gnl|bosTau2|chr11 (34779804-34779980)
               

               
               27-203, gnl|Hg17|chr2 (85482954-85482778)
               

               
               27-203, gnl|Mm7|chr6 (72624496-72624672)
               


               
               359-675, gnl|bosTau2|chr11 (34780527-34780828)
               

               
               359-675, gnl|Hg17|chr2 (85482165-85481835)
               

               
               359-675, gnl|Mm7|chr6 (72625170-72625437)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-203, gnl|bosTau2|chr11 (34779804-34779980)
               

               
               27-203, gnl|Hg17|chr2 (85482954-85482778)
               

               
               27-203, gnl|Mm7|chr6 (72624496-72624672)
               


               
               359-675, gnl|bosTau2|chr11 (34780527-34780828)
               

               
               359-675, gnl|Hg17|chr2 (85482165-85481835)
               

               
               359-675, gnl|Mm7|chr6 (72625170-72625437)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               cty (0.10408)

	27-203, gnl\|bosTau2\|chr11 (34779804-34779980)
	27-203, gnl\|Hg17\|chr2 (85482954-85482778)
	27-203, gnl\|Mm7\|chr6 (72624496-72624672)

	359-675, gnl\|bosTau2\|chr11 (34780527-34780828)
	359-675, gnl\|Hg17\|chr2 (85482165-85481835)
	359-675, gnl\|Mm7\|chr6 (72625170-72625437)