Ss1.1-Pig1-123D14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAATAAGAAGGATGTGGGCAGACAAGAGCTTGGCTCCTAGGCTCAGGGGGACACAAGAT GGTCAAGTCACTAGAGACATGATCAAGGGACAATAGTATTAGGGAAGACATTGAGTGCTA GTATCAGGGGTCAGACACTACACAGAGGACAAGCTACCACTGGGGAGGCTGGAGGTGGGC ACTCAGCTGCTGTGGGAGAGGGACAGAGAGGGCATAGGCCCAGAGTAGGCAGTCCTGTTG GTTCCAGTCCATTTCAGCCCTCTGTCACTTGGAGTGGACCCTTCCTACTTTTCGTATCTA TCTTCCCAGTCCCTTCTCCCAGGAGACTAGTGCCAAATGGCCTCTTTCTGCCAGTTTTGG TACCTTCTCTGGCTTCTCCAGTCCTGCTCCCTCACTCTATTTTTAAAGTGCCAAATAAAT CCCCTCCCTCTTTCTCAAAGCACAGTGATGGCACTGAGCCCTGCCCAGCACCTCAGTGGA GGGGGCCTGCTTGCTCTTTGTTTTGGTCCCAGATCCCGGGGTGGGGCAGAAATGTTTGCC AACTTGGGGTGGGGGGAAAGTTTGAAGAGCAACCGCCCCCTACCGCTGCTGCACCCTAGG AATACTGAACAGGAACGTGGTGCCCCATGCCCAGATGATAAACACTGAGCTGCCAAAAAA TTTTTTATACCAGAGGATCCCAAGGGGGGAGGGGAAGGCTCACCCCCAGGGTTATTTTTG GGGAGGGAGGGGCTGTGTATAGGCCATATTCTTTAGAATCTATTTTACTAACTGACTTGT TTTGGGATATATTACCCAAATAAAACATGTTTCTATAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAATAAGAAGGATGTGGGCAGACAAGAGCTTGGCTCCTAGGCTCAGGGGGACACAAGAT GGTCAAGTCACTAGAGACATGATCAAGGGACAATAGTATTAGGGAAGACATTGAGTGCTA GTATCAGGGGTCAGACACTACACAGAGGACAAGCTACCACTGGGGAGGCTGGAGGTGGGC ACTCAGCTGCTGTGGGAGAGGGACAGAGAGGGCATAGGCCCAGAGTAGGCAGTCCTGTTG GTTCCAGTCCATTTCAGCCCTCTGTCACTTGGAGTGGACCCTTCCTACTTTTCGTATCTA TCTTCCCAGTCCCTTCTCCCAGGAGACTAGTGCCAAATGGCCTCTTTCTGCCAGTTTTGG TACCTTCTCTGGCTTCTCCAGTCCTGCTCCCTCACTCTATTTTTAAAGTGCCAAATAAAT CCCCTCCCTCTTTCTCAAAGCACAGTGATGGCACTGAGCCCTGCCCAGCACCTCAGTGGA GGGGGCCTGCTTGCTCTTTGTTTTGGTCCCAGATCCCGGGGTGGGGCAGAAATGTTTGCC AACTTGGGGTGGGGGGAAAGTTTGAAGAGCAACCGCCCCCTACCGCTGCTGCACCCTAGG AATACTGAACAGGAACGTGGTGCCCCATGCCCAGATGATAAACACTGAGCTGCCAAAAAA TTTTTTATACCAGAGGATCCCAAGGGGGGAGGGGAAGGCTCACCCCCAGGGTTATTTTTG GGGAGGGAGGGGCTGTGTATAGGCCATATTCTTTAGAATCTATTTTACTAACTGACTTGT TTTGGGATATATTACCCAAATAAAACATGTTTCTATAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 233-417, - strand, RNAz p=0.99994 | |
| 455-567, + strand, RNAz p=0.672462 | |
| 675-817, - strand, RNAz p=0.732309 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 233-417, - strand, RNAz p=0.99994 | |
| 455-567, + strand, RNAz p=0.672462 | |
| 675-817, - strand, RNAz p=0.732309 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_014437, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 2-567, gnl|bosTau2|chr3 (8142427-8141844) | |
| 2-567, gnl|Hg17|chr1 (150745488-150744915) | |
| 2-567, gnl|Mm7|chr3 (90383238-90384093) | |
| 600-817, gnl|bosTau2|chr3 (8141564-8141344) | |
| 600-817, gnl|canFam2|chr7 (46149343-46149553) | |
| 600-817, gnl|canFam2|chr7 (46149582-46149349) | |
| 600-817, gnl|dasNov1|scaffold_5017 (85187-84970) | |
| 600-817, gnl|dasNov1|scaffold_5017 (84942-85180) | |
| 600-817, gnl|echTel1|scaffold_193654 (6444-6707) | |
| 600-817, gnl|echTel1|scaffold_286841 (73828-74053) | |
| 600-817, gnl|hg17|chr1 (150744636-150744877) | |
| 600-817, gnl|Hg17|chr1 (150744876-150744661) | |
| 600-817, gnl|hg17|chr22 (29164525-29164793) | |
| 600-817, gnl|loxAfr1|scaffold_100090 (1846-1633) | |
| 600-817, gnl|loxAfr1|scaffold_100090 (1605-1838) | |
| 600-817, gnl|mm7|chr3 (90384136-90384344) | |
| 600-817, gnl|mm7|chr3 (90384434-90384137) | |
| 600-817, gnl|Mm7|chr3 (90384132-90384345) | |
| 600-817, gnl|monDom2|scaffold_59 (4123620-4123398) | |
| 600-817, gnl|oryCun1|scaffold_108634 (3958-3718) | |
| 600-817, gnl|oryCun1|scaffold_198987 (48785-48534) | |
| 600-817, gnl|panTro1|chr1 (132725867-132726108) | |
| 600-817, gnl|panTro1|chr23 (29259216-29259484) | |
| 600-817, gnl|rheMac2|chr1 (132475965-132476204) | |
| 600-817, gnl|rheMac2|chr10 (74295380-74295648) | |
| 600-817, gnl|rn3|chr2 (182445964-182446171) | |
| 600-817, gnl|rn3|chr2 (182446250-182445965) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-567, gnl|bosTau2|chr3 (8142427-8141844) | |
| 2-567, gnl|Hg17|chr1 (150745488-150744915) | |
| 2-567, gnl|Mm7|chr3 (90383238-90384093) | |
| 600-817, gnl|bosTau2|chr3 (8141564-8141344) | |
| 600-817, gnl|canFam2|chr7 (46149343-46149553) | |
| 600-817, gnl|canFam2|chr7 (46149582-46149349) | |
| 600-817, gnl|dasNov1|scaffold_5017 (85187-84970) | |
| 600-817, gnl|dasNov1|scaffold_5017 (84942-85180) | |
| 600-817, gnl|echTel1|scaffold_193654 (6444-6707) | |
| 600-817, gnl|echTel1|scaffold_286841 (73828-74053) | |
| 600-817, gnl|hg17|chr1 (150744636-150744877) | |
| 600-817, gnl|Hg17|chr1 (150744876-150744661) | |
| 600-817, gnl|hg17|chr22 (29164525-29164793) | |
| 600-817, gnl|loxAfr1|scaffold_100090 (1846-1633) | |
| 600-817, gnl|loxAfr1|scaffold_100090 (1605-1838) | |
| 600-817, gnl|mm7|chr3 (90384136-90384344) | |
| 600-817, gnl|mm7|chr3 (90384434-90384137) | |
| 600-817, gnl|Mm7|chr3 (90384132-90384345) | |
| 600-817, gnl|monDom2|scaffold_59 (4123620-4123398) | |
| 600-817, gnl|oryCun1|scaffold_108634 (3958-3718) | |
| 600-817, gnl|oryCun1|scaffold_198987 (48785-48534) | |
| 600-817, gnl|panTro1|chr1 (132725867-132726108) | |
| 600-817, gnl|panTro1|chr23 (29259216-29259484) | |
| 600-817, gnl|rheMac2|chr1 (132475965-132476204) | |
| 600-817, gnl|rheMac2|chr10 (74295380-74295648) | |
| 600-817, gnl|rn3|chr2 (182445964-182446171) | |
| 600-817, gnl|rn3|chr2 (182446250-182445965) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| elu (0.385356) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |