Non-Coding RNA Search

Ss1.1-Pig1-123E06.5

Sequence:


               
               TCCTGCTCTTGGGAGGGGACACCCTTCAAGCTGTCACTTTATGGACTGTCTGTGCAATTA
CGTCCACCAAAGACCTGTGTTGGGGGGCTCAGCTAGAGGCCCTGGGGGACCCCCTGAAGC
ATTGCTGCCTCACTTTATGTCACCTGCTTCTCCCCTTTTGGGGCTAAGAAGGAGGTAGGC
AAACCCCTAAAAGGGAGGCCCCCTTTTCACCCATCCCCTCTCCTTTGGCACAGCAGCCCC
TAGCTGGGGGTGGGGCCTTGGGGGTCTGGGCTGGGCATCCACCGTCACTGCCTCAGCCCA
TCCAGGCTGTGCCTTTGACTTTAAAATAAAAGTCTACCCAGTGCTGTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGG
CTTTTTTTATATTTTTTGGGGGGGGGCCCACCCCCCCCCCCCCCTTTTTTTTTTAAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGCTCTTGGGAGGGGACACCCTTCAAGCTGTCACTTTATGGACTGTCTGTGCAATTA
CGTCCACCAAAGACCTGTGTTGGGGGGCTCAGCTAGAGGCCCTGGGGGACCCCCTGAAGC
ATTGCTGCCTCACTTTATGTCACCTGCTTCTCCCCTTTTGGGGCTAAGAAGGAGGTAGGC
AAACCCCTAAAAGGGAGGCCCCCTTTTCACCCATCCCCTCTCCTTTGGCACAGCAGCCCC
TAGCTGGGGGTGGGGCCTTGGGGGTCTGGGCTGGGCATCCACCGTCACTGCCTCAGCCCA
TCCAGGCTGTGCCTTTGACTTTAAAATAAAAGTCTACCCAGTGCTGTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGG
CTTTTTTTATATTTTTTGGGGGGGGGCCCACCCCCCCCCCCCCCTTTTTTTTTTAAAAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-348, + strand, RNAz p=0.999638

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-348, + strand, RNAz p=0.999638

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               169-260, - strand, RNAmicro p=0.980326

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               169-260, - strand, RNAmicro p=0.980326

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC047896, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC047896, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-348, gnl|bosTau2|chr29 (33518683-33519037)
               

               
               2-348, gnl|Hg17|chr11 (63895910-63896258)
               

               
               2-348, gnl|Mm7|chr19 (6649290-6648948)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-348, gnl|bosTau2|chr29 (33518683-33519037)
               

               
               2-348, gnl|Hg17|chr11 (63895910-63896258)
               

               
               2-348, gnl|Mm7|chr19 (6649290-6648948)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	2-348, gnl\|bosTau2\|chr29 (33518683-33519037)
	2-348, gnl\|Hg17\|chr11 (63895910-63896258)
	2-348, gnl\|Mm7\|chr19 (6649290-6648948)