Non-Coding RNA Search

Ss1.1-Pig1-123J05.5

Sequence:


               
               GTTTCTGGTATGGTCCATAGTAATAATTAAAGAGACTTAGGAATATGTCTGCTTGTTTAT
TGAGGAAATAGTGTGACTACTTCTCCTTGTAAAGCCTTATTATTTCATTTCTCAGAACAG
GGATGTGCCTAGGAGTGTGATTTGTGGATGGTTGAGTTTGTGGGACCGATCCTTAAACAT
CAGAAGTACTTTTAGTCAGCTGAACATCTGCTAAAATGTAGATATATAAAAAGTGTCAGC
AAGGATGTTATACCTAAACATTTTTTCAGAAGGTGAAAGTTTCTTATCAACCAAAATATG
GAACAGAAGAGTGACTTCTGCCTCGCTTTAGCGTCTAGAGCAAGTCCGCTGATGGGTGCA
ATAAACCAGAGTCACAGTGTGTTCAGATTTGGATCATCTGACACTCTTGAGCAGAGAAGA
ATAATTTCAGAAGCTCTGCTTGTAAATTAAAGGTTTAGAAGCATTGCATGAAATGAAGAC
AATTAAGTCTATCCTTAGCAAAGACATCTGAACAAGCTTTTGTTTTTCCTAAAAGTCCCT
TAGAAGGAGGATTGAGAATTCTCAGAGCCTCTCTGACCAATGGCAGTACCTTAACACAGT
CCTCTATGTATGTATAGATTTTTATTTAACTTGACATTTTAGTGCAAAGGTTCTTTTCAA
CTAGGCAAGATGGCATTTGTAGGCTTTTTAAGATGAAGAATTAATATATCTTTGTCGACT
GCTCTCCCATGGTGGCCTGATAAGGCTGAGAGAGAAATATATGTGCCAGATCCTGTCTTC
TCCCTATGCCAGGCCATAGCTTTGGAAGTGTGTTTTGTAAGTTCAACTGTAGGTTAGTGA
AAATGTTGTTTCCCATTAATTAACTTAGCCTGTCCTGGTCACAATCAACCCTTACCAAGG
TACAAAGGGGTATGTAGGAGGGAATCTAGAAGAAGTAACCTTTTATTCACCAATATTAGA
GCTTTTCTAGATTGCTTGAGTGGGTGTAGAAAACCAAGTAGAATTCGGCCTTGGGTCACT
AAATAATATAAAAATGTGTGATCTATGTAGGTATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCTGGTATGGTCCATAGTAATAATTAAAGAGACTTAGGAATATGTCTGCTTGTTTAT
TGAGGAAATAGTGTGACTACTTCTCCTTGTAAAGCCTTATTATTTCATTTCTCAGAACAG
GGATGTGCCTAGGAGTGTGATTTGTGGATGGTTGAGTTTGTGGGACCGATCCTTAAACAT
CAGAAGTACTTTTAGTCAGCTGAACATCTGCTAAAATGTAGATATATAAAAAGTGTCAGC
AAGGATGTTATACCTAAACATTTTTTCAGAAGGTGAAAGTTTCTTATCAACCAAAATATG
GAACAGAAGAGTGACTTCTGCCTCGCTTTAGCGTCTAGAGCAAGTCCGCTGATGGGTGCA
ATAAACCAGAGTCACAGTGTGTTCAGATTTGGATCATCTGACACTCTTGAGCAGAGAAGA
ATAATTTCAGAAGCTCTGCTTGTAAATTAAAGGTTTAGAAGCATTGCATGAAATGAAGAC
AATTAAGTCTATCCTTAGCAAAGACATCTGAACAAGCTTTTGTTTTTCCTAAAAGTCCCT
TAGAAGGAGGATTGAGAATTCTCAGAGCCTCTCTGACCAATGGCAGTACCTTAACACAGT
CCTCTATGTATGTATAGATTTTTATTTAACTTGACATTTTAGTGCAAAGGTTCTTTTCAA
CTAGGCAAGATGGCATTTGTAGGCTTTTTAAGATGAAGAATTAATATATCTTTGTCGACT
GCTCTCCCATGGTGGCCTGATAAGGCTGAGAGAGAAATATATGTGCCAGATCCTGTCTTC
TCCCTATGCCAGGCCATAGCTTTGGAAGTGTGTTTTGTAAGTTCAACTGTAGGTTAGTGA
AAATGTTGTTTCCCATTAATTAACTTAGCCTGTCCTGGTCACAATCAACCCTTACCAAGG
TACAAAGGGGTATGTAGGAGGGAATCTAGAAGAAGTAACCTTTTATTCACCAATATTAGA
GCTTTTCTAGATTGCTTGAGTGGGTGTAGAAAACCAAGTAGAATTCGGCCTTGGGTCACT
AAATAATATAAAAATGTGTGATCTATGTAGGTATAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1056, gnl|bosTau2|chr2 (21845927-21846983)
               

               
               1-1056, gnl|Hg17|chr2 (169453386-169454443)
               

               
               1-1056, gnl|Mm7|chr2 (69040785-69041796)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1056, gnl|bosTau2|chr2 (21845927-21846983)
               

               
               1-1056, gnl|Hg17|chr2 (169453386-169454443)
               

               
               1-1056, gnl|Mm7|chr2 (69040785-69041796)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               rec (0.692281)
               

               
               sag (0.182715)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.692281)
               

               
               sag (0.182715)
               

               
               bla (0.124347)

	1-1056, gnl\|bosTau2\|chr2 (21845927-21846983)
	1-1056, gnl\|Hg17\|chr2 (169453386-169454443)
	1-1056, gnl\|Mm7\|chr2 (69040785-69041796)