Non-Coding RNA Search

Ss1.1-Pig1-123J17.5

Sequence:


               
               TCTCAAATATTGAAGAATCTCAAATCAGGGACACCAGCCTCGGCGAAGACCTTGGGCGAC
TTCAAAGCGCAGGCACCTCGATTCCCCGAATCTATGTTGTGTGGCGGGTATCGGTGTTCC
CCTGGTTTAACTAGCCTGTTTGATGGGGAAACCAGGGCATAGAAGTCAAGAAATTTGCTC
AAGATCATGAAAGGAAAAAATGGTGGAGCCAGTATGTGAACACAAGCCACCTTCCTCTAC
AGCTCATGTTCTTGAATCATCAGTCAATGAAGGCAATGCACCTGGGGGGCGAGGGGAGTT
AGCTTAGCAGTTGCTTAGCTGCCGCTGATGATGAGAGAGGATCCTGGTCCTTCCTTGGGG
TGGTTACCATGGGTTACCATGGCACAGCTTCCACAGAAGCTGCTCCCATTTGGGAAACAT
GTATCATTATCTTATTTCCTTGTTGAACATTGTACTGTCATGTTCCTACTTGTTCTCCTC
CTCCACATAGCTTCCTAGGTTTTTGTGGTTCTGTAATTCTAGGGAAGAAAGGATAATGAG
AATCCCGATGTGTTTTTCAGCAGAAAGCTAATTTTCCATCACCTATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCAAATATTGAAGAATCTCAAATCAGGGACACCAGCCTCGGCGAAGACCTTGGGCGAC
TTCAAAGCGCAGGCACCTCGATTCCCCGAATCTATGTTGTGTGGCGGGTATCGGTGTTCC
CCTGGTTTAACTAGCCTGTTTGATGGGGAAACCAGGGCATAGAAGTCAAGAAATTTGCTC
AAGATCATGAAAGGAAAAAATGGTGGAGCCAGTATGTGAACACAAGCCACCTTCCTCTAC
AGCTCATGTTCTTGAATCATCAGTCAATGAAGGCAATGCACCTGGGGGGCGAGGGGAGTT
AGCTTAGCAGTTGCTTAGCTGCCGCTGATGATGAGAGAGGATCCTGGTCCTTCCTTGGGG
TGGTTACCATGGGTTACCATGGCACAGCTTCCACAGAAGCTGCTCCCATTTGGGAAACAT
GTATCATTATCTTATTTCCTTGTTGAACATTGTACTGTCATGTTCCTACTTGTTCTCCTC
CTCCACATAGCTTCCTAGGTTTTTGTGGTTCTGTAATTCTAGGGAAGAAAGGATAATGAG
AATCCCGATGTGTTTTTCAGCAGAAAGCTAATTTTCCATCACCTATAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               251-441, + strand, RNAz p=0.999904

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-441, + strand, RNAz p=0.999904

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               26-142, gnl|bosTau2|chr8 (3385427-3385542)
               

               
               26-142, gnl|Hg17|chr4 (174826845-174826959)
               

               
               26-142, gnl|Mm7|chr8 (55703126-55703019)
               


               
               251-585, gnl|bosTau2|chr8 (3443246-3443581)
               

               
               251-585, gnl|canFam2|chr25 (27181741-27181965)
               

               
               251-585, gnl|dasNov1|scaffold_550 (45437-45218)
               

               
               251-585, gnl|hg17|chr4 (174878695-174878895)
               

               
               251-585, gnl|Hg17|chr4 (174878714-174879497)
               

               
               251-585, gnl|loxAfr1|scaffold_1280 (86430-86652)
               

               
               251-585, gnl|mm7|chr8 (55633888-55633730)
               

               
               251-585, gnl|oryCun1|scaffold_204744 (15404-15201)
               

               
               251-585, gnl|panTro1|chr3 (192860904-192861104)
               

               
               251-585, gnl|rheMac2|chr5 (165642110-165642310)
               

               
               251-585, gnl|rn3|chr16 (36399050-36399208)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-142, gnl|bosTau2|chr8 (3385427-3385542)
               

               
               26-142, gnl|Hg17|chr4 (174826845-174826959)
               

               
               26-142, gnl|Mm7|chr8 (55703126-55703019)
               


               
               251-585, gnl|bosTau2|chr8 (3443246-3443581)
               

               
               251-585, gnl|canFam2|chr25 (27181741-27181965)
               

               
               251-585, gnl|dasNov1|scaffold_550 (45437-45218)
               

               
               251-585, gnl|hg17|chr4 (174878695-174878895)
               

               
               251-585, gnl|Hg17|chr4 (174878714-174879497)
               

               
               251-585, gnl|loxAfr1|scaffold_1280 (86430-86652)
               

               
               251-585, gnl|mm7|chr8 (55633888-55633730)
               

               
               251-585, gnl|oryCun1|scaffold_204744 (15404-15201)
               

               
               251-585, gnl|panTro1|chr3 (192860904-192861104)
               

               
               251-585, gnl|rheMac2|chr5 (165642110-165642310)
               

               
               251-585, gnl|rn3|chr16 (36399050-36399208)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	26-142, gnl\|bosTau2\|chr8 (3385427-3385542)
	26-142, gnl\|Hg17\|chr4 (174826845-174826959)
	26-142, gnl\|Mm7\|chr8 (55703126-55703019)

	251-585, gnl\|bosTau2\|chr8 (3443246-3443581)
	251-585, gnl\|canFam2\|chr25 (27181741-27181965)
	251-585, gnl\|dasNov1\|scaffold_550 (45437-45218)
	251-585, gnl\|hg17\|chr4 (174878695-174878895)
	251-585, gnl\|Hg17\|chr4 (174878714-174879497)
	251-585, gnl\|loxAfr1\|scaffold_1280 (86430-86652)
	251-585, gnl\|mm7\|chr8 (55633888-55633730)
	251-585, gnl\|oryCun1\|scaffold_204744 (15404-15201)
	251-585, gnl\|panTro1\|chr3 (192860904-192861104)
	251-585, gnl\|rheMac2\|chr5 (165642110-165642310)
	251-585, gnl\|rn3\|chr16 (36399050-36399208)