Non-Coding RNA Search

Ss1.1-Pig1-124A16.5

Sequence:


               
               AGAAGAGTAGGAGGCACCCACACAGCCTCCGAACAGCCCCAGGGCCACCAGCTGGGCCCT
CCAACTGCAAGTCCATGTGATCCTTGTTGTTAAGGACCCAGGGCCTGCAGGGGGCTGGGC
TTCTCTTCTGAGGATGTGCCAAGGTGGGGAGGAGAGATAAGGTAGTTTCTCAGCCTCTTG
GTTCAGGGAATTTTCTTTTCGTCTTCTTCCTTCTTTTTCCTTTCTTGTCTTTTCAGAGGC
AAGCCAGATCTTGCAGGCAGCCAGGCCGTTCCGTGTTCTATTTTTGCCTCTAGCCGCAGC
TGCTGTTCTTAGGACAGCCAGCCCTTGCTGGATTCCTGGGCCTCATGCCTGTGGGCCCAG
AGGAGTTCACAGAGGTAGGAGAGATGAGGATGGCAGCAATTCCAGACCAGTGCCCCCAGT
TCTGTCCCTGACTGCTGGCCCTTCCAGGCCCCGGGAGCTACTCCTCCTGTCCCCTGTTCC
TCCAGGGCCATCACATTCTTTCCCCGAGTCTGGGCTGAGAGCAAAGCCACCACCTCCTCT
GCTGTTGGCACTGCCTTCAGTCCTGCATTAAGCCGCACCTGTCCTGCCTTTATGTGACAG
AGGAGCTTTTCTGGAATTTCAAGCCATTGCTCTTAGGCTCGATTTAAACCTGGAATCAAG
AGGCCAAGAGCCCCCTCCAGGCCTGGAGGCCAGTCCCCTCTGCTGGGCACGTGCAAACCC
CCAAGTCCAAGAGGTCTCATTCCTGGTACCACAGTCTCTGGTCCCTCCATCTCCACCAGG
CTCTGTCTTGTTCGAGTCCTTCCTCCCAGTGAGACCGCCCCCAAGGAATAAAGAAAGGGG
CTGCTGCCGCCTCCCCAGGCTGGAGACCCCTCTGCCCAAAGAGCAGCCCAAAGCTCATTG
CTCTGCCCTCAAGACCACGCCTGCCAAGAGGTAGCTGCTAAGCCTGGGAGAGGGCGCTCA
GGGGCAAAGGGGCACCATCGCATCCCTGCCTCAGGCCAACCGTGGATGACCTCCCTGGGC
TGCTGCCAGCTCAAGGCCCCAGGGCGGCCCACAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGAGTAGGAGGCACCCACACAGCCTCCGAACAGCCCCAGGGCCACCAGCTGGGCCCT
CCAACTGCAAGTCCATGTGATCCTTGTTGTTAAGGACCCAGGGCCTGCAGGGGGCTGGGC
TTCTCTTCTGAGGATGTGCCAAGGTGGGGAGGAGAGATAAGGTAGTTTCTCAGCCTCTTG
GTTCAGGGAATTTTCTTTTCGTCTTCTTCCTTCTTTTTCCTTTCTTGTCTTTTCAGAGGC
AAGCCAGATCTTGCAGGCAGCCAGGCCGTTCCGTGTTCTATTTTTGCCTCTAGCCGCAGC
TGCTGTTCTTAGGACAGCCAGCCCTTGCTGGATTCCTGGGCCTCATGCCTGTGGGCCCAG
AGGAGTTCACAGAGGTAGGAGAGATGAGGATGGCAGCAATTCCAGACCAGTGCCCCCAGT
TCTGTCCCTGACTGCTGGCCCTTCCAGGCCCCGGGAGCTACTCCTCCTGTCCCCTGTTCC
TCCAGGGCCATCACATTCTTTCCCCGAGTCTGGGCTGAGAGCAAAGCCACCACCTCCTCT
GCTGTTGGCACTGCCTTCAGTCCTGCATTAAGCCGCACCTGTCCTGCCTTTATGTGACAG
AGGAGCTTTTCTGGAATTTCAAGCCATTGCTCTTAGGCTCGATTTAAACCTGGAATCAAG
AGGCCAAGAGCCCCCTCCAGGCCTGGAGGCCAGTCCCCTCTGCTGGGCACGTGCAAACCC
CCAAGTCCAAGAGGTCTCATTCCTGGTACCACAGTCTCTGGTCCCTCCATCTCCACCAGG
CTCTGTCTTGTTCGAGTCCTTCCTCCCAGTGAGACCGCCCCCAAGGAATAAAGAAAGGGG
CTGCTGCCGCCTCCCCAGGCTGGAGACCCCTCTGCCCAAAGAGCAGCCCAAAGCTCATTG
CTCTGCCCTCAAGACCACGCCTGCCAAGAGGTAGCTGCTAAGCCTGGGAGAGGGCGCTCA
GGGGCAAAGGGGCACCATCGCATCCCTGCCTCAGGCCAACCGTGGATGACCTCCCTGGGC
TGCTGCCAGCTCAAGGCCCCAGGGCGGCCCACAGTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               620-769, - strand, RNAz p=0.822931
               

               
               810-953, - strand, RNAz p=0.997369

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               620-769, - strand, RNAz p=0.822931
               

               
               810-953, - strand, RNAz p=0.997369

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               832-944, LB02964.CR_M08 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE358917.1|), 
blast E-value=0.0000000000006, identity=85.84%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               832-944, LB02964.CR_M08 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE358917.1|), 
blast E-value=0.0000000000006, identity=85.84%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-982, gnl|bosTau2|chr8 (36068128-36069097)
               

               
               6-982, gnl|Hg17|chr8 (20150355-20149027)
               

               
               6-982, gnl|Mm7|chr8 (67589268-67588285)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-982, gnl|bosTau2|chr8 (36068128-36069097)
               

               
               6-982, gnl|Hg17|chr8 (20150355-20149027)
               

               
               6-982, gnl|Mm7|chr8 (67589268-67588285)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               nco (0.161734)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               ebs (0.118301)

	620-769, - strand, RNAz p=0.822931
	810-953, - strand, RNAz p=0.997369

	6-982, gnl\|bosTau2\|chr8 (36068128-36069097)
	6-982, gnl\|Hg17\|chr8 (20150355-20149027)
	6-982, gnl\|Mm7\|chr8 (67589268-67588285)