Non-Coding RNA Search

Ss1.1-Pig1-124H12.5

Sequence:


               
               AGATGACCTACTCTTCCACTCAATTTACCATTTGAATAGGGAAGAGTTCATTTATTTTTA
TTACTTGGCATTCAATTAATAATTCATTGTTTTGCATACATTTGAGTCATTTGTGGCCTC
TGAAGTGTTTTTGTACCTAATTTAATGGTTGGAAAGCAAAGCACATGAGTTTAAAACTGA
GCAAGAAGTTTTGGTAATTTTTTCCCTGAATACTTGGTAGTTTCTATTGATATTATTCCA
AAACAGATGCTCCTGTTTTAGGCTGTGTATTTACTTCGCTTTTGTCCTCACAAAAAGCCA
AGCACTAAATCAATTTGTTATTGTGTTCTAATAATCAGTTTAAAATCTGAGATTTTCTTT
TTTTTAAATTAGAAGCTTTAATGAAGTGCCATGTAATTGTAGCTTACTAGTGTTTAATGT
TTAATAGACTGGTTCTGTGGTGTTCTAATCATTTAACACTCTGTTATCCCCAGAGAAAGT
GGCTCCACTCTTAATTGGAACACAATCTCTCTGGCAAAATCACCAGCTGCTTTATTTTTC
TATTTATTACAGTTAAATAGTTGATGAGGTCTGAATCTTGACCAAACTGCTCAGCTGAGA
TGTTTTTCACAATAGACACTGTACAAAATGTGCGTGCAAAAGGACACAGTTGGGTGGTAG
TATTTTTTTCATTAATGTGAACATTGACTAAACAAAGCAGTCCTGCCTTTTAAATCTTGT
GGCAGCTCAGGAGGGAGGTGCTTAAGAACCTTAACTACTATGTCCGATGACAAAATACTT
TTTTCCATTTTGGAGATTGGGTACTGCTCACACATGATGTATAGGGCTAAATATATGCTT
GTTTCCTTGCACCTGTGTACTTCCCCTTTTTTCCCTCCCTTTCCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGACCTACTCTTCCACTCAATTTACCATTTGAATAGGGAAGAGTTCATTTATTTTTA
TTACTTGGCATTCAATTAATAATTCATTGTTTTGCATACATTTGAGTCATTTGTGGCCTC
TGAAGTGTTTTTGTACCTAATTTAATGGTTGGAAAGCAAAGCACATGAGTTTAAAACTGA
GCAAGAAGTTTTGGTAATTTTTTCCCTGAATACTTGGTAGTTTCTATTGATATTATTCCA
AAACAGATGCTCCTGTTTTAGGCTGTGTATTTACTTCGCTTTTGTCCTCACAAAAAGCCA
AGCACTAAATCAATTTGTTATTGTGTTCTAATAATCAGTTTAAAATCTGAGATTTTCTTT
TTTTTAAATTAGAAGCTTTAATGAAGTGCCATGTAATTGTAGCTTACTAGTGTTTAATGT
TTAATAGACTGGTTCTGTGGTGTTCTAATCATTTAACACTCTGTTATCCCCAGAGAAAGT
GGCTCCACTCTTAATTGGAACACAATCTCTCTGGCAAAATCACCAGCTGCTTTATTTTTC
TATTTATTACAGTTAAATAGTTGATGAGGTCTGAATCTTGACCAAACTGCTCAGCTGAGA
TGTTTTTCACAATAGACACTGTACAAAATGTGCGTGCAAAAGGACACAGTTGGGTGGTAG
TATTTTTTTCATTAATGTGAACATTGACTAAACAAAGCAGTCCTGCCTTTTAAATCTTGT
GGCAGCTCAGGAGGGAGGTGCTTAAGAACCTTAACTACTATGTCCGATGACAAAATACTT
TTTTCCATTTTGGAGATTGGGTACTGCTCACACATGATGTATAGGGCTAAATATATGCTT
GTTTCCTTGCACCTGTGTACTTCCCCTTTTTTCCCTCCCTTTCCTCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               424-658, - strand, RNAz p=0.811735
               

               
               772-888, - strand, RNAz p=0.618821

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               424-658, - strand, RNAz p=0.811735
               

               
               772-888, - strand, RNAz p=0.618821

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-888, gnl|bosTau2|chr6 (50549291-50548398)
               

               
               1-888, gnl|Hg17|chr4 (78992642-78991753)
               

               
               1-888, gnl|Mm7|chr5 (95284559-95283716)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr6 (50549291-50548398)
               

               
               1-888, gnl|Hg17|chr4 (78992642-78991753)
               

               
               1-888, gnl|Mm7|chr5 (95284559-95283716)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mga (0.32041)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.32041)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)

	424-658, - strand, RNAz p=0.811735
	772-888, - strand, RNAz p=0.618821

	1-888, gnl\|bosTau2\|chr6 (50549291-50548398)
	1-888, gnl\|Hg17\|chr4 (78992642-78991753)
	1-888, gnl\|Mm7\|chr5 (95284559-95283716)

	mga (0.32041)
	gul (0.177588)
	liv (0.146284)
	nmm (0.132802)
	ret (0.128733)