Non-Coding RNA Search

Ss1.1-Pig1-124H17.5

Sequence:


               
               CTTGGCCACCATTGCGCTCATTACCTTCTCCTACATCAACAACATGGTTCGAGTGGGAAC
CCTGGTCATGTGTCTCCATGATGCCTCAGACTTTTTGTTGGAGGCAGCCAAGCTGGCCAA
TTATGCCAAGTATCAGCGTCTCTGTGACACCCTCTTTGTGGTCTTCAGTGCTGTTTTTGT
GGTGACCCGTCTAGGAATCTATCCATTCTGGATTCTGAACACGACCCTCTTTGAGAGTTG
GGAGATGATTGGGCCCTACCCCTCCTGGTGGCTCTTCAATGGCCTTCTCCTGATCCTACA
GGTTCTGCATGTCATCTGGTCCTACCTGATTGCACGAATTGCTTTCAAAGCCTTGATCCG
AGGAAAGGTATCTAAGGATGATCGCAGTGATGTGGAGAGCAGCTCAGAGGAAGAAGATGT
GACCACCAGCACAAAAAGCTCCTGTGGCAGCAGCTCCAGCAATGGTGCCAATCGGGTGAA
TGGTCACATGGGAGGCAGCTACTGGGCTGAAGAGTAAGGTGGTTGGTGTGGGGACTTAAG
CACAGATGGACTTGTAGGGCCACTGGCAACCTACTCTTCTCCAGCCTCCCCACATCCGCA
CTCTTGTGACGAGGGGGTGTGCAGGGCATTGAGGAGAATCAAAGAAACAAATATTTTCAC
TTTTTTAAGAAAACTCTACCATTGTGTATTTAATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGCCACCATTGCGCTCATTACCTTCTCCTACATCAACAACATGGTTCGAGTGGGAAC
CCTGGTCATGTGTCTCCATGATGCCTCAGACTTTTTGTTGGAGGCAGCCAAGCTGGCCAA
TTATGCCAAGTATCAGCGTCTCTGTGACACCCTCTTTGTGGTCTTCAGTGCTGTTTTTGT
GGTGACCCGTCTAGGAATCTATCCATTCTGGATTCTGAACACGACCCTCTTTGAGAGTTG
GGAGATGATTGGGCCCTACCCCTCCTGGTGGCTCTTCAATGGCCTTCTCCTGATCCTACA
GGTTCTGCATGTCATCTGGTCCTACCTGATTGCACGAATTGCTTTCAAAGCCTTGATCCG
AGGAAAGGTATCTAAGGATGATCGCAGTGATGTGGAGAGCAGCTCAGAGGAAGAAGATGT
GACCACCAGCACAAAAAGCTCCTGTGGCAGCAGCTCCAGCAATGGTGCCAATCGGGTGAA
TGGTCACATGGGAGGCAGCTACTGGGCTGAAGAGTAAGGTGGTTGGTGTGGGGACTTAAG
CACAGATGGACTTGTAGGGCCACTGGCAACCTACTCTTCTCCAGCCTCCCCACATCCGCA
CTCTTGTGACGAGGGGGTGTGCAGGGCATTGAGGAGAATCAAAGAAACAAATATTTTCAC
TTTTTTAAGAAAACTCTACCATTGTGTATTTAATAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61849742|ref|XP_609253.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61849742|ref|XP_609253.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               405-684, + strand, RNAz p=0.927475

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               405-684, + strand, RNAz p=0.927475

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_147190, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_147190, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               102-211, gnl|bosTau2|chr5 (22996871-22996980)
               

               
               102-211, gnl|canFam2|chr27 (7599775-7599678)
               

               
               102-211, gnl|danRer3|chr22 (4877490-4877587)
               

               
               102-211, gnl|dasNov1|scaffold_52038 (11850-11753)
               

               
               102-211, gnl|echTel1|scaffold_288177 (13769-13866)
               

               
               102-211, gnl|fr1|chrUn (115309275-115309372)
               

               
               102-211, gnl|galGal2|chrUn (6353233-6353136)
               

               
               102-211, gnl|hg17|chr12 (48815777-48815874)
               

               
               102-211, gnl|Hg17|chr12 (48815890-48815781)
               

               
               102-211, gnl|loxAfr1|scaffold_456 (82397-82494)
               

               
               102-211, gnl|mm7|chr15 (99724646-99724743)
               

               
               102-211, gnl|Mm7|chr15 (99724759-99724650)
               

               
               102-211, gnl|oryCun1|scaffold_84178 (5415-5512)
               

               
               102-211, gnl|panTro1|chr10 (50001125-50001222)
               

               
               102-211, gnl|rheMac2|chr11 (47264515-47264612)
               

               
               102-211, gnl|rn3|chr7 (138555416-138555513)
               

               
               102-211, gnl|tetNig1|chr11 (7360345-7360248)
               


               
               366-696, gnl|bosTau2|chr5 (23000189-23000517)
               

               
               366-696, gnl|Hg17|chr12 (48810746-48810420)
               

               
               366-696, gnl|Mm7|chr15 (99721683-99721389)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-211, gnl|bosTau2|chr5 (22996871-22996980)
               

               
               102-211, gnl|canFam2|chr27 (7599775-7599678)
               

               
               102-211, gnl|danRer3|chr22 (4877490-4877587)
               

               
               102-211, gnl|dasNov1|scaffold_52038 (11850-11753)
               

               
               102-211, gnl|echTel1|scaffold_288177 (13769-13866)
               

               
               102-211, gnl|fr1|chrUn (115309275-115309372)
               

               
               102-211, gnl|galGal2|chrUn (6353233-6353136)
               

               
               102-211, gnl|hg17|chr12 (48815777-48815874)
               

               
               102-211, gnl|Hg17|chr12 (48815890-48815781)
               

               
               102-211, gnl|loxAfr1|scaffold_456 (82397-82494)
               

               
               102-211, gnl|mm7|chr15 (99724646-99724743)
               

               
               102-211, gnl|Mm7|chr15 (99724759-99724650)
               

               
               102-211, gnl|oryCun1|scaffold_84178 (5415-5512)
               

               
               102-211, gnl|panTro1|chr10 (50001125-50001222)
               

               
               102-211, gnl|rheMac2|chr11 (47264515-47264612)
               

               
               102-211, gnl|rn3|chr7 (138555416-138555513)
               

               
               102-211, gnl|tetNig1|chr11 (7360345-7360248)
               


               
               366-696, gnl|bosTau2|chr5 (23000189-23000517)
               

               
               366-696, gnl|Hg17|chr12 (48810746-48810420)
               

               
               366-696, gnl|Mm7|chr15 (99721683-99721389)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               med (0.232504)
               

               
               ton (0.1755)
               

               
               cki (0.165235)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               ton (0.1755)
               

               
               cki (0.165235)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)

	102-211, gnl\|bosTau2\|chr5 (22996871-22996980)
	102-211, gnl\|canFam2\|chr27 (7599775-7599678)
	102-211, gnl\|danRer3\|chr22 (4877490-4877587)
	102-211, gnl\|dasNov1\|scaffold_52038 (11850-11753)
	102-211, gnl\|echTel1\|scaffold_288177 (13769-13866)
	102-211, gnl\|fr1\|chrUn (115309275-115309372)
	102-211, gnl\|galGal2\|chrUn (6353233-6353136)
	102-211, gnl\|hg17\|chr12 (48815777-48815874)
	102-211, gnl\|Hg17\|chr12 (48815890-48815781)
	102-211, gnl\|loxAfr1\|scaffold_456 (82397-82494)
	102-211, gnl\|mm7\|chr15 (99724646-99724743)
	102-211, gnl\|Mm7\|chr15 (99724759-99724650)
	102-211, gnl\|oryCun1\|scaffold_84178 (5415-5512)
	102-211, gnl\|panTro1\|chr10 (50001125-50001222)
	102-211, gnl\|rheMac2\|chr11 (47264515-47264612)
	102-211, gnl\|rn3\|chr7 (138555416-138555513)
	102-211, gnl\|tetNig1\|chr11 (7360345-7360248)

	366-696, gnl\|bosTau2\|chr5 (23000189-23000517)
	366-696, gnl\|Hg17\|chr12 (48810746-48810420)
	366-696, gnl\|Mm7\|chr15 (99721683-99721389)

	med (0.232504)
	ton (0.1755)
	cki (0.165235)
	hyp (0.142837)
	lnt (0.142308)
	che (0.136314)
	kid (0.129735)
	jej (0.0989218)