Non-Coding RNA Search

Ss1.1-Pig1-124I21.5

Sequence:


               
               AATATGACCCACTGAGCCGTCAAGAAGGGCAGAGTGAAAACACCACTTTTGGGTGAAGCA
GCAGCGTGTCGTGTTGTTTTGCTTCAATCGGTGGTGTGATAAGGTGGGGGAAAAAAAGAA
GAATCCGACTGCAGGTGCCCGGATCACTGGAGATAAATGCAGTCTGGCACGGGACCCTCG
TGAAGCTGCTCCGGAGTCTCTACGCGCTGGGGCTCCCGGCGACCTCCAAGGAGCTGCAGT
CGGTGGAGCAGGAGGTCCGCTGGCGCATGCGCAGGCTCAGGTACAAGCACCTGGCCTTCC
TGGCCGAGTCCAGCGCCACCTACATGCAGGAGCAGGGCTCCCAGGAGCTGCTGGCTGAGC
TGCTTGTGCACCTGGAGCGGCGCTGGACGGAAATCGATGACGGGCGCACAGTGGTGGCCA
TGATGGTGAAGATAGGACACCTCTCCCAGTCGCTGATGAACCGCCTGGAGGACAAGGGCC
TCACTGCATGGGACCCCTGGCCCTCGGGCCACCGAGCTGACCCCTGCCGGCTGTGGTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATGACCCACTGAGCCGTCAAGAAGGGCAGAGTGAAAACACCACTTTTGGGTGAAGCA
GCAGCGTGTCGTGTTGTTTTGCTTCAATCGGTGGTGTGATAAGGTGGGGGAAAAAAAGAA
GAATCCGACTGCAGGTGCCCGGATCACTGGAGATAAATGCAGTCTGGCACGGGACCCTCG
TGAAGCTGCTCCGGAGTCTCTACGCGCTGGGGCTCCCGGCGACCTCCAAGGAGCTGCAGT
CGGTGGAGCAGGAGGTCCGCTGGCGCATGCGCAGGCTCAGGTACAAGCACCTGGCCTTCC
TGGCCGAGTCCAGCGCCACCTACATGCAGGAGCAGGGCTCCCAGGAGCTGCTGGCTGAGC
TGCTTGTGCACCTGGAGCGGCGCTGGACGGAAATCGATGACGGGCGCACAGTGGTGGCCA
TGATGGTGAAGATAGGACACCTCTCCCAGTCGCTGATGAACCGCCTGGAGGACAAGGGCC
TCACTGCATGGGACCCCTGGCCCTCGGGCCACCGAGCTGACCCCTGCCGGCTGTGGTTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61858638|ref|XP_593800.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61858638|ref|XP_593800.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-390, - strand, RNAz p=0.832146

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-390, - strand, RNAz p=0.832146

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               4-106, gnl|bosTau2|chr19 (41592978-41593081)
               

               
               4-106, gnl|canFam2|chr9 (26724704-26724615)
               

               
               4-106, gnl|dasNov1|scaffold_47925 (4781-4865)
               

               
               4-106, gnl|echTel1|scaffold_317965 (30984-30910)
               

               
               4-106, gnl|galGal2|chr27 (2574155-2574222)
               

               
               4-106, gnl|hg17|chr17 (34262635-34262720)
               

               
               4-106, gnl|Hg17|chr17 (34262739-34262640)
               

               
               4-106, gnl|mm7|chr11 (97890671-97890761)
               

               
               4-106, gnl|Mm7|chr11 (97890780-97890676)
               

               
               4-106, gnl|monDom2|scaffold_18 (47778875-47778979)
               

               
               4-106, gnl|oryCun1|scaffold_175847 (107696-107605)
               

               
               4-106, gnl|panTro1|chr19 (37481579-37481664)
               

               
               4-106, gnl|rheMac2|chr16 (48888272-48888360)
               

               
               4-106, gnl|rn3|chr10 (86545186-86545275)
               

               
               4-106, gnl|tetNig1|chrUn_random (37629496-37629476)
               

               
               4-106, gnl|xenTro1|scaffold_334 (578226-578149)
               


               
               151-477, gnl|bosTau2|chr4 (43276347-43276021)
               

               
               151-477, gnl|Hg17|chr7 (44918605-44918279)
               

               
               151-477, gnl|Mm7|chr11 (6573071-6572745)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-106, gnl|bosTau2|chr19 (41592978-41593081)
               

               
               4-106, gnl|canFam2|chr9 (26724704-26724615)
               

               
               4-106, gnl|dasNov1|scaffold_47925 (4781-4865)
               

               
               4-106, gnl|echTel1|scaffold_317965 (30984-30910)
               

               
               4-106, gnl|galGal2|chr27 (2574155-2574222)
               

               
               4-106, gnl|hg17|chr17 (34262635-34262720)
               

               
               4-106, gnl|Hg17|chr17 (34262739-34262640)
               

               
               4-106, gnl|mm7|chr11 (97890671-97890761)
               

               
               4-106, gnl|Mm7|chr11 (97890780-97890676)
               

               
               4-106, gnl|monDom2|scaffold_18 (47778875-47778979)
               

               
               4-106, gnl|oryCun1|scaffold_175847 (107696-107605)
               

               
               4-106, gnl|panTro1|chr19 (37481579-37481664)
               

               
               4-106, gnl|rheMac2|chr16 (48888272-48888360)
               

               
               4-106, gnl|rn3|chr10 (86545186-86545275)
               

               
               4-106, gnl|tetNig1|chrUn_random (37629496-37629476)
               

               
               4-106, gnl|xenTro1|scaffold_334 (578226-578149)
               


               
               151-477, gnl|bosTau2|chr4 (43276347-43276021)
               

               
               151-477, gnl|Hg17|chr7 (44918605-44918279)
               

               
               151-477, gnl|Mm7|chr11 (6573071-6572745)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	4-106, gnl\|bosTau2\|chr19 (41592978-41593081)
	4-106, gnl\|canFam2\|chr9 (26724704-26724615)
	4-106, gnl\|dasNov1\|scaffold_47925 (4781-4865)
	4-106, gnl\|echTel1\|scaffold_317965 (30984-30910)
	4-106, gnl\|galGal2\|chr27 (2574155-2574222)
	4-106, gnl\|hg17\|chr17 (34262635-34262720)
	4-106, gnl\|Hg17\|chr17 (34262739-34262640)
	4-106, gnl\|mm7\|chr11 (97890671-97890761)
	4-106, gnl\|Mm7\|chr11 (97890780-97890676)
	4-106, gnl\|monDom2\|scaffold_18 (47778875-47778979)
	4-106, gnl\|oryCun1\|scaffold_175847 (107696-107605)
	4-106, gnl\|panTro1\|chr19 (37481579-37481664)
	4-106, gnl\|rheMac2\|chr16 (48888272-48888360)
	4-106, gnl\|rn3\|chr10 (86545186-86545275)
	4-106, gnl\|tetNig1\|chrUn_random (37629496-37629476)
	4-106, gnl\|xenTro1\|scaffold_334 (578226-578149)

	151-477, gnl\|bosTau2\|chr4 (43276347-43276021)
	151-477, gnl\|Hg17\|chr7 (44918605-44918279)
	151-477, gnl\|Mm7\|chr11 (6573071-6572745)