Non-Coding RNA Search

Ss1.1-Pig1-124O21.5

Sequence:


               
               ACAATGTCCTTTATTTGTTTTCTTTAAACGGTTAAACTGTGTGACCCTTTCCTGCGATGT
AGGACTTATGGGGAGGGATTGGAGAGAAGCAGAGTGATGAGGTGGAATGAAGGGGGCAAT
AGTGCCAAGTGGGCAGGATTGTCACACACTTCCCACCCCTCCAATAAAAAGCGATTTCAG
ACAGACCCAACTTTCTGACAACCTCTACACCCTCTCCCACCTAGGATAGAGAGAGCCACA
TCAGTGCTCCTGGCTGATCCCTGCTTCCAGCTCCGCTCTATATGCTATCTCCTGGGGCAG
TCAGAGCCCCCTACTCCTGGCACTGCCCTATCTGCCCCTGACCGGAAGCACTTTTCCCTA
CAGAGCTGTGAGTTGGTTGGGGGTGGGTCAGGGAAGAGGGGGATTTGGGGCTGGGTCAGG
TCACTGGTCTTAAGAGCAAATTCCCAAGCTGGAATTACTCAAAAGGCCCTGGGTATAGGG
CCATATTTTACTGACGCCTCCTGCCACCCTCTAGACACAGATTACATCAGTGTTGAGGAG
CTGGCCCAGGTGGAACAGATGCTGGCACACCTGACCACTGCATCTGCCCAGGCAGCAGCT
GCCTCTCTGGTGAGTGGGGCCACAGCACCCAGGTTCACATCCCTCAAATACGTATCAGCA
CAGCTGTGTGCAGTGTACTGCCAGTTGTCTAGGCATCCAACCTCAGCCCACCCTGCACCC
TGCTCCCTGCAGCCCACCAGTGAGGAAGACCTCTGCCCCATCTGCTATGCTCACCCCATT
TCTGCTGTGTTCCAGCCCTGTGGCCACAAGTCCTGCAAGTAAGCGGGCCCCATGGGAACA
GGGGGCTGGGCAGGGGAGTAGCAGGGATACACAGACCACCCTCATGCCCTCCCCTGCTAT
ATAGAGCCTGCATTAACCAGCACCTGATGAACAACAAGGATTGCTTCTTTTGCAAAGCCA
CCATTGTGTCTGTAGAGGACTGGGACAAGGCAGCCAATGCAAGTGCCACTTCCTCTGCTG
CCTAGACCCACCTCACCCACAGAACAGGAACCTTCACCCTTGAAGTCAAACTCAGGCTGG
GTCCTATTTATGAGCTCCCCTTGCCCTGTCTCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAATGTCCTTTATTTGTTTTCTTTAAACGGTTAAACTGTGTGACCCTTTCCTGCGATGT
AGGACTTATGGGGAGGGATTGGAGAGAAGCAGAGTGATGAGGTGGAATGAAGGGGGCAAT
AGTGCCAAGTGGGCAGGATTGTCACACACTTCCCACCCCTCCAATAAAAAGCGATTTCAG
ACAGACCCAACTTTCTGACAACCTCTACACCCTCTCCCACCTAGGATAGAGAGAGCCACA
TCAGTGCTCCTGGCTGATCCCTGCTTCCAGCTCCGCTCTATATGCTATCTCCTGGGGCAG
TCAGAGCCCCCTACTCCTGGCACTGCCCTATCTGCCCCTGACCGGAAGCACTTTTCCCTA
CAGAGCTGTGAGTTGGTTGGGGGTGGGTCAGGGAAGAGGGGGATTTGGGGCTGGGTCAGG
TCACTGGTCTTAAGAGCAAATTCCCAAGCTGGAATTACTCAAAAGGCCCTGGGTATAGGG
CCATATTTTACTGACGCCTCCTGCCACCCTCTAGACACAGATTACATCAGTGTTGAGGAG
CTGGCCCAGGTGGAACAGATGCTGGCACACCTGACCACTGCATCTGCCCAGGCAGCAGCT
GCCTCTCTGGTGAGTGGGGCCACAGCACCCAGGTTCACATCCCTCAAATACGTATCAGCA
CAGCTGTGTGCAGTGTACTGCCAGTTGTCTAGGCATCCAACCTCAGCCCACCCTGCACCC
TGCTCCCTGCAGCCCACCAGTGAGGAAGACCTCTGCCCCATCTGCTATGCTCACCCCATT
TCTGCTGTGTTCCAGCCCTGTGGCCACAAGTCCTGCAAGTAAGCGGGCCCCATGGGAACA
GGGGGCTGGGCAGGGGAGTAGCAGGGATACACAGACCACCCTCATGCCCTCCCCTGCTAT
ATAGAGCCTGCATTAACCAGCACCTGATGAACAACAAGGATTGCTTCTTTTGCAAAGCCA
CCATTGTGTCTGTAGAGGACTGGGACAAGGCAGCCAATGCAAGTGCCACTTCCTCTGCTG
CCTAGACCCACCTCACCCACAGAACAGGAACCTTCACCCTTGAAGTCAAACTCAGGCTGG
GTCCTATTTATGAGCTCCCCTTGCCCTGTCTCCCAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               128-407, - strand, RNAz p=0.925845
               

               
               712-831, - strand, RNAz p=0.819114

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-407, - strand, RNAz p=0.925845
               

               
               712-831, - strand, RNAz p=0.819114

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               724-877, - strand, RNAmicro p=0.999363

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               724-877, - strand, RNAmicro p=0.999363

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               49-1114, gnl|bosTau2|chr22 (38093051-38094085)
               

               
               49-1114, gnl|Hg17|chr3 (49732787-49733838)
               

               
               49-1114, gnl|Mm7|chr9 (107784387-107783442)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-1114, gnl|bosTau2|chr22 (38093051-38094085)
               

               
               49-1114, gnl|Hg17|chr3 (49732787-49733838)
               

               
               49-1114, gnl|Mm7|chr9 (107784387-107783442)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               pla (0.267344)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	128-407, - strand, RNAz p=0.925845
	712-831, - strand, RNAz p=0.819114

	49-1114, gnl\|bosTau2\|chr22 (38093051-38094085)
	49-1114, gnl\|Hg17\|chr3 (49732787-49733838)
	49-1114, gnl\|Mm7\|chr9 (107784387-107783442)

	pla (0.267344)
	mcp (0.170648)
	lnt (0.142308)
	clu (0.119646)
	ebs (0.118301)
	nbm (0.0993246)