Non-Coding RNA Search

Ss1.1-Pig1-125B06.5

Sequence:


               
               CACCGCCTGCCGAGGGGATTTGGCGTCTGCCGCCCGGGCTTTTGCTTGGTCCGCGGGCCT
CGGACGGGGATTCGGAGAGCTTATCTCTTGGCGGCTCTTCCCGCGCACGGAAATTGCGGC
GTACCTGCGGAGGGCGTACCTGCGCGTGAGGAGGAGGAAGGGCAAGATCCAGCCTGAGTG
ACCCGCGCTCCGGCCTGTCCGCACAAGGGTAGCCCCCCTGGGAGGGGGTGAAGCTCCCCG
TCTGTATTTGTGTTCCCGGCCCCAGCGTGGGCCACTGGCTACAAGATGAACTGTCGCTCG
GAGGTGCTGGAGGTGTCCGTGGAGGGGCGGCAGGTGGAGGAGGCCATGCTGGCCGTGCTG
CACACGGTGCTCCTGCACCGCAGCACAGGCAAGTTCCACTATAAGAAGGAGGGCACCTAC
TCCATCGGCACTGTGGGCACCCAGGATGTCGACTGCGACTTCATCGACTTCACCTACGTG
CGCGTCTCCTCCGAGGAGCTGGACCGCGCTCTGCGCAAGGTGGTCGGAGAGTTCAGGGAT
GCTCTGCGCAACTCCGGGGGCGATGGGCTGGGGCAGATGTCCCTGGAGTTTTATCAGAAG
AAGAAGTCTCGCTGGCCGTTCTCAGATGAGTGCATCCCCTGGGAAGTGTGGACAGTCAAG
GTGCACGTGGTGGCCCTGGCTACGGAGCAGGAGCGGCAGATCTGCCGGGAGAAGGTGGGC
GAGAAGCTCTGCGAGAAGATCATCAACATCGTGGAGGTGATGAACCGGCATGAGTACCTG
CCCAAGATGCCCACGCAGTCCGAGGTGGACAACGTGTTCGACACGGGCCTGCGGGACGTG
CAGCCCTACCTCTACAAGATCTCCTTCCAGATCACCGATGCCCTGGGCTCCTCGGTCACC
ACCACCATGCGCAGGCTCATCAAAGACACCCTGGCCCTCTAGGCCTTGCCGGGGGCCTTG
GGTGCTCCTCGATGGCTTGTGGACTTAGGCTTCTGGGGATGGTTCTCTTAGGCCCTTGGG
GCCCTGGAACCTGCTCTGGGTCCTTGACGCGACTTGGAAGGTTGGCCCCTGGCTTCCTTG
TTTGTGGTTGCCAGACTCTGGTCATCCTCTTAACTTTCACTGGCAGTCAAGTCCGGCCTG
CACCGTCTCTCCACACCCCTGGTGGGGTCCCCTTTCCTTCATTGTACAGAGGAGCCATCA
CTAGGATGGTGAATAAAGGTGAGAATGTGAGTTTGGCTGGAGCCATCTCTGCCTGGGCTG
GTGTCGCCCTGAAACGTGAACACCTGGCAGACCTGTGACGACACAGGTGTGTGTTGAGGC
CATTGTTCCACGATGCCGGGGTGGGAGGATGGGATTAAAGGTAGATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCGCCTGCCGAGGGGATTTGGCGTCTGCCGCCCGGGCTTTTGCTTGGTCCGCGGGCCT
CGGACGGGGATTCGGAGAGCTTATCTCTTGGCGGCTCTTCCCGCGCACGGAAATTGCGGC
GTACCTGCGGAGGGCGTACCTGCGCGTGAGGAGGAGGAAGGGCAAGATCCAGCCTGAGTG
ACCCGCGCTCCGGCCTGTCCGCACAAGGGTAGCCCCCCTGGGAGGGGGTGAAGCTCCCCG
TCTGTATTTGTGTTCCCGGCCCCAGCGTGGGCCACTGGCTACAAGATGAACTGTCGCTCG
GAGGTGCTGGAGGTGTCCGTGGAGGGGCGGCAGGTGGAGGAGGCCATGCTGGCCGTGCTG
CACACGGTGCTCCTGCACCGCAGCACAGGCAAGTTCCACTATAAGAAGGAGGGCACCTAC
TCCATCGGCACTGTGGGCACCCAGGATGTCGACTGCGACTTCATCGACTTCACCTACGTG
CGCGTCTCCTCCGAGGAGCTGGACCGCGCTCTGCGCAAGGTGGTCGGAGAGTTCAGGGAT
GCTCTGCGCAACTCCGGGGGCGATGGGCTGGGGCAGATGTCCCTGGAGTTTTATCAGAAG
AAGAAGTCTCGCTGGCCGTTCTCAGATGAGTGCATCCCCTGGGAAGTGTGGACAGTCAAG
GTGCACGTGGTGGCCCTGGCTACGGAGCAGGAGCGGCAGATCTGCCGGGAGAAGGTGGGC
GAGAAGCTCTGCGAGAAGATCATCAACATCGTGGAGGTGATGAACCGGCATGAGTACCTG
CCCAAGATGCCCACGCAGTCCGAGGTGGACAACGTGTTCGACACGGGCCTGCGGGACGTG
CAGCCCTACCTCTACAAGATCTCCTTCCAGATCACCGATGCCCTGGGCTCCTCGGTCACC
ACCACCATGCGCAGGCTCATCAAAGACACCCTGGCCCTCTAGGCCTTGCCGGGGGCCTTG
GGTGCTCCTCGATGGCTTGTGGACTTAGGCTTCTGGGGATGGTTCTCTTAGGCCCTTGGG
GCCCTGGAACCTGCTCTGGGTCCTTGACGCGACTTGGAAGGTTGGCCCCTGGCTTCCTTG
TTTGTGGTTGCCAGACTCTGGTCATCCTCTTAACTTTCACTGGCAGTCAAGTCCGGCCTG
CACCGTCTCTCCACACCCCTGGTGGGGTCCCCTTTCCTTCATTGTACAGAGGAGCCATCA
CTAGGATGGTGAATAAAGGTGAGAATGTGAGTTTGGCTGGAGCCATCTCTGCCTGGGCTG
GTGTCGCCCTGAAACGTGAACACCTGGCAGACCTGTGACGACACAGGTGTGTGTTGAGGC
CATTGTTCCACGATGCCGGGGTGGGAGGATGGGATTAAAGGTAGATTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9BSB4_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9BSB4_HUMAN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               537-1368, gnl|bosTau2|chr5 (19515884-19516731)
               

               
               537-1368, gnl|Hg17|chr12 (50756836-50757677)
               

               
               537-1368, gnl|Mm7|chr15 (101276110-101276918)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               537-1368, gnl|bosTau2|chr5 (19515884-19516731)
               

               
               537-1368, gnl|Hg17|chr12 (50756836-50757677)
               

               
               537-1368, gnl|Mm7|chr15 (101276110-101276918)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               csp (0.483559)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.483559)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

	537-1368, gnl\|bosTau2\|chr5 (19515884-19516731)
	537-1368, gnl\|Hg17\|chr12 (50756836-50757677)
	537-1368, gnl\|Mm7\|chr15 (101276110-101276918)

	csp (0.483559)
	ece (0.229305)
	col (0.195008)
	nlu (0.191681)
	cov (0.132153)
	eje (0.0988338)