Non-Coding RNA Search

Ss1.1-Pig1-125F12.5

Sequence:


               
               TGGAGAGGGGCACCCACTTCTGGCTACTGGTCTTCATGCCGCTCTTCTTTGTGTCTCCCG
TCTCCGTGGCCGCCTGTGTATGGGGCTTCCGGCACGACAGGTCCCTGGAGCTGGAGATCC
TGTGCTCTGTCAACATCCTGCAGTTCATCTTCATCGCCCTGAGGCTGGACAGGATCATCC
ACTGGCCGTGGCTGGTGGTGTTTGTGCCGCTCTGGATCCTCATGTCCTTTCTCTGCCTGG
TGGTCCTCTATTACATTGTCTGGTCCCTCCTGTTCCTGCGTTCTCTGGATGTGGTTGCCG
AGCAGCGAAGAACACATGTGACCATGGCCATCAGCTGGATAACGATCGTCGTGCCCCTGC
TCACTTTTGAGGTTCTGCTGGTTCACAGGCTGGACGGCCACAACGTGTTCTCCTACGTCT
CCATATTCGTCCCTCTTTGGCTGTCATTAATCACTTTAATGACCACAACATTTCGGCGAA
AGGGGGGCAACCACTGGTGGTTTGGTATTCGCAGAGATTTCTGTCAGTTTTTGCTTGAAA
TTTGCCCTTGTTTAAGAGAATACGGGAACATTTCATACGATCTACATCATGAAGATAGTG
AAGACGCTGAAGAAACGTCATCTGTTCCAGAAGCTCCTAAAATCGCTCCAATGTTCGGAA
AGAAGGCCAGGGTCGTGATAACCCAGAGCCCTGGAAAATATGTTCCCCCACCTCCCAAGT
TAAATATTGATATGCCGGATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGAGGGGCACCCACTTCTGGCTACTGGTCTTCATGCCGCTCTTCTTTGTGTCTCCCG
TCTCCGTGGCCGCCTGTGTATGGGGCTTCCGGCACGACAGGTCCCTGGAGCTGGAGATCC
TGTGCTCTGTCAACATCCTGCAGTTCATCTTCATCGCCCTGAGGCTGGACAGGATCATCC
ACTGGCCGTGGCTGGTGGTGTTTGTGCCGCTCTGGATCCTCATGTCCTTTCTCTGCCTGG
TGGTCCTCTATTACATTGTCTGGTCCCTCCTGTTCCTGCGTTCTCTGGATGTGGTTGCCG
AGCAGCGAAGAACACATGTGACCATGGCCATCAGCTGGATAACGATCGTCGTGCCCCTGC
TCACTTTTGAGGTTCTGCTGGTTCACAGGCTGGACGGCCACAACGTGTTCTCCTACGTCT
CCATATTCGTCCCTCTTTGGCTGTCATTAATCACTTTAATGACCACAACATTTCGGCGAA
AGGGGGGCAACCACTGGTGGTTTGGTATTCGCAGAGATTTCTGTCAGTTTTTGCTTGAAA
TTTGCCCTTGTTTAAGAGAATACGGGAACATTTCATACGATCTACATCATGAAGATAGTG
AAGACGCTGAAGAAACGTCATCTGTTCCAGAAGCTCCTAAAATCGCTCCAATGTTCGGAA
AGAAGGCCAGGGTCGTGATAACCCAGAGCCCTGGAAAATATGTTCCCCCACCTCCCAAGT
TAAATATTGATATGCCGGATTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10436952|dbj|BAB14938.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10436952|dbj|BAB14938.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               400-519, + strand, RNAz p=0.6858

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-519, + strand, RNAz p=0.6858

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr2 (43566012-43565272)
               

               
               1-744, gnl|Hg17|chr2 (120696469-120695729)
               

               
               1-744, gnl|Mm7|chr1 (119387343-119388083)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr2 (43566012-43565272)
               

               
               1-744, gnl|Hg17|chr2 (120696469-120695729)
               

               
               1-744, gnl|Mm7|chr1 (119387343-119388083)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               cki (0.165235)
               

               
               spl (0.143184)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cki (0.165235)
               

               
               spl (0.143184)

	1-744, gnl\|bosTau2\|chr2 (43566012-43565272)
	1-744, gnl\|Hg17\|chr2 (120696469-120695729)
	1-744, gnl\|Mm7\|chr1 (119387343-119388083)