Non-Coding RNA Search

Ss1.1-Pig1-125H15.5

Sequence:


               
               GGCTCCAACAGGACTGGGATTAGGGTGAGGAGAGAAAATCTGAATTGAATAAGTACAGGA
TTGAATCCTGTCTTTATTTAAAATTTTGATGCTTTGTTCATTGTGGATTAGTTTTGATTT
TCAAAAAATACTGCATTAAAATAGCATCTTGCTTACTGGGTTTGGGGGCATCCCTTAAAT
TTTGTGCCCAAAGTGAGTGCCTTGCCCTCCTCATCCTGTTTCTAGGGTTAGAACAACACT
GGTGGGACCACCACCTTATGAACTTCCGTCCCCTAATATGCACCCAAACAACAGGTGGCT
CAAACTCACACCTAGAATTTGCACAGCTCACCTAGCTTTCCTATAGGCATCCATCTATAC
CATAGGATTTTGGCCTGGACCAATAGGAATGGAAATTGACCAGGGGTACTCCCAGGGAAT
AAAACCAGGAAAGTTTTGATTCTCCACTGGACTGCTGTGTTTGGATTTGATCTGTTACTA
GATTCTAGTTAATACTTTTGTTTTTAAAAACTGAGGACAAATGAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCCAACAGGACTGGGATTAGGGTGAGGAGAGAAAATCTGAATTGAATAAGTACAGGA
TTGAATCCTGTCTTTATTTAAAATTTTGATGCTTTGTTCATTGTGGATTAGTTTTGATTT
TCAAAAAATACTGCATTAAAATAGCATCTTGCTTACTGGGTTTGGGGGCATCCCTTAAAT
TTTGTGCCCAAAGTGAGTGCCTTGCCCTCCTCATCCTGTTTCTAGGGTTAGAACAACACT
GGTGGGACCACCACCTTATGAACTTCCGTCCCCTAATATGCACCCAAACAACAGGTGGCT
CAAACTCACACCTAGAATTTGCACAGCTCACCTAGCTTTCCTATAGGCATCCATCTATAC
CATAGGATTTTGGCCTGGACCAATAGGAATGGAAATTGACCAGGGGTACTCCCAGGGAAT
AAAACCAGGAAAGTTTTGATTCTCCACTGGACTGCTGTGTTTGGATTTGATCTGTTACTA
GATTCTAGTTAATACTTTTGTTTTTAAAAACTGAGGACAAATGAACAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-146, + strand, RNAz p=0.93548

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-146, + strand, RNAz p=0.93548

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-527, gnl|bosTau2|chr3 (17535299-17535830)
               

               
               1-527, gnl|Hg17|chr1 (146726697-146726158)
               

               
               1-527, gnl|Mm7|chr3 (96032262-96032769)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-527, gnl|bosTau2|chr3 (17535299-17535830)
               

               
               1-527, gnl|Hg17|chr1 (146726697-146726158)
               

               
               1-527, gnl|Mm7|chr3 (96032262-96032769)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fat (0.147427)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	1-527, gnl\|bosTau2\|chr3 (17535299-17535830)
	1-527, gnl\|Hg17\|chr1 (146726697-146726158)
	1-527, gnl\|Mm7\|chr3 (96032262-96032769)

	fat (0.147427)
	nca (0.136874)
	kid (0.129735)
	tra (0.123092)
	ldo (0.0970026)