Non-Coding RNA Search

Ss1.1-Pig1-125H20.5

Sequence:


               
               CGCACCCGGCGGCTCCTCAAGACCCGACGGCTCAATTCCCGAGGGTTCCCCGCGGGCGCC
GGCTTCTCGCCCACCTGTGCCCCCTGTCAGGCGCAGCAACGCTGTTAGCTCATCCTGGTA
TCGGGCGCCAGCGGCGCAGTCCCCGTAGCCAGTCACCGAGTGTCGTCCGGGTTGCGCCCC
TCGTCTCTCCAAGGGCCCAGCCGCTCCTACTCCAGCTCCGGCAAGAGCTCCCGGGCTGCC
CAGGGCCGGGGGATATGAGTGGCGGCTTTCCTGGCAGCCGAATCCGGCCGGCCGATGAGC
GCACAGTCGGTCCAGGGCAGCGTGGAGCTCGGGGTAGGCGGACGGCACCCCTCCGGAGGA
ATAGCCTGCCGGAACCCCAGCCAGGGGTGGGCCAAACAGGCAAGGCCCGGCAGGCAGAGG
ACTGCCGTGGCGCTGGTCATAGCCCATGCTGATGCCGCTGGTACGATTGCTGCAGGGTCG
GCTACCTCCGGCTCCACCAGCCCCCGCCCCGTCCAGCAGCAGACTGCCCCGGGGGCTGGA
CGGCTTGCTCGCGTCGCTGGCTGAGCTACTGGCAAAACTGGAGCGGGGGCTTAGGGCTGG
GGCCGTGGTCTCCAGCCGAAAGTCAGGGGGCAATGACTGAGGTAGAGGCAAGGCCCGGGT
GGGAGGTGGCACCCCGGGAAAGGAGGCTTCGTAGCGCTGCGCCTCAAAGGAGCCGCGGGG
GTTCCGCTCAGCATCCAGGGGGCCTTGCTCCCGGGCTGGCTCCAACGGCTCATCCCCAAG
TCCCCCAGTAGCTCCACGGGGCCCTGATTTCCTAGGTCCCCCTAATCCGCTCTGACGCCC
CTTTCCCGGCCCGGGGGTCCCATCAGACCCAGACCGGCTAGATTCACCCTTTCTGCGGCC
GAACTTGGCGCTGCCGGAGTCCGAGAGTCTTAACTTCTCTAGCAGGCGACTGGCTTTCTC
CCCTAATCGCTCCATGCCCTCGGGCCTGGGGACTCCAGCCCCCTCCCCGCCCGGCACCCT
GCAGCGTCTCGGTGGCCGCTTCTCTCTCCCTGCGGCTGGACTCGGGTTCCCCGGGGGCAC
AGGATAGGCACCGGGATTTAGCGGGTGGCCTGGATGCCCCGCGCCAAGAATCCCGCAGCA
TCCCCCAGCGACAGGGGTTGCGTCCCCCCGCGCATCAGGGGTTAAGCAAGGCTAGAAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACCCGGCGGCTCCTCAAGACCCGACGGCTCAATTCCCGAGGGTTCCCCGCGGGCGCC
GGCTTCTCGCCCACCTGTGCCCCCTGTCAGGCGCAGCAACGCTGTTAGCTCATCCTGGTA
TCGGGCGCCAGCGGCGCAGTCCCCGTAGCCAGTCACCGAGTGTCGTCCGGGTTGCGCCCC
TCGTCTCTCCAAGGGCCCAGCCGCTCCTACTCCAGCTCCGGCAAGAGCTCCCGGGCTGCC
CAGGGCCGGGGGATATGAGTGGCGGCTTTCCTGGCAGCCGAATCCGGCCGGCCGATGAGC
GCACAGTCGGTCCAGGGCAGCGTGGAGCTCGGGGTAGGCGGACGGCACCCCTCCGGAGGA
ATAGCCTGCCGGAACCCCAGCCAGGGGTGGGCCAAACAGGCAAGGCCCGGCAGGCAGAGG
ACTGCCGTGGCGCTGGTCATAGCCCATGCTGATGCCGCTGGTACGATTGCTGCAGGGTCG
GCTACCTCCGGCTCCACCAGCCCCCGCCCCGTCCAGCAGCAGACTGCCCCGGGGGCTGGA
CGGCTTGCTCGCGTCGCTGGCTGAGCTACTGGCAAAACTGGAGCGGGGGCTTAGGGCTGG
GGCCGTGGTCTCCAGCCGAAAGTCAGGGGGCAATGACTGAGGTAGAGGCAAGGCCCGGGT
GGGAGGTGGCACCCCGGGAAAGGAGGCTTCGTAGCGCTGCGCCTCAAAGGAGCCGCGGGG
GTTCCGCTCAGCATCCAGGGGGCCTTGCTCCCGGGCTGGCTCCAACGGCTCATCCCCAAG
TCCCCCAGTAGCTCCACGGGGCCCTGATTTCCTAGGTCCCCCTAATCCGCTCTGACGCCC
CTTTCCCGGCCCGGGGGTCCCATCAGACCCAGACCGGCTAGATTCACCCTTTCTGCGGCC
GAACTTGGCGCTGCCGGAGTCCGAGAGTCTTAACTTCTCTAGCAGGCGACTGGCTTTCTC
CCCTAATCGCTCCATGCCCTCGGGCCTGGGGACTCCAGCCCCCTCCCCGCCCGGCACCCT
GCAGCGTCTCGGTGGCCGCTTCTCTCTCCCTGCGGCTGGACTCGGGTTCCCCGGGGGCAC
AGGATAGGCACCGGGATTTAGCGGGTGGCCTGGATGCCCCGCGCCAAGAATCCCGCAGCA
TCCCCCAGCGACAGGGGTTGCGTCCCCCCGCGCATCAGGGGTTAAGCAAGGCTAGAAGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55741683|ref|NP_445955.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55741683|ref|NP_445955.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               321-440, - strand, RNAz p=0.95743
               

               
               561-840, + strand, RNAz p=0.955559

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-440, - strand, RNAz p=0.95743
               

               
               561-840, + strand, RNAz p=0.955559

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1-1075, gnl|bosTau2|chr10 (14064039-14062965)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1075, gnl|bosTau2|chr10 (14064039-14062965)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	321-440, - strand, RNAz p=0.95743
	561-840, + strand, RNAz p=0.955559