Non-Coding RNA Search

Ss1.1-Pig1-126H06.5

Sequence:


               
               AACTGCTGCTTCGAGCACCGACACCATGAGTGGTTGCTTGGGCCCGAGGTGGACATTCTC
CCCTTCTTGCTGCTGCCCCTGGCGGGGCCTGAGGACTTCTCAGAGGAAGAGATGGACCGG
CTGCCTGTTGACCTGCAGTACCTTCCGCCAGACAAGCAGCGAGAGCCCGATGCTGACATT
CGAAAGATGCTGATCGAGGCCATCATGCTGCTGACAGCCACAGCACCTGGTCGGAAGCAG
GTGAGGGACCAGGGAGCATACCTGATCCTCCGTGAGCTGCACAGCTGGGAGCCAGAGCCT
GACGTGCAGGTGGCTTGTGAGAAACTCATCCAGGTCCTTATTGGGGATGAACCAGAACAT
GGCCTGGAAAACTTGCTGGAGGTGCAGGTGCCTGAAGATGTTGAGCGGCAGCTGCAGCAG
CAGGACCGCCAGGAGCAGGAGCAGTGCAAGCGGGAGCATCAGGAGTTGGAGCTGGCCCCA
GAGCCACAAGCAGAGGGAGCTGCACCCACCTGAGGCCCCTGAAGCCTCCCACCAGCTCCA
GGCCCACCTTTGCTAACCATCAGTCCAGGCCTCCCAGACCAGGCATGCCTGCAGCGTCCT
GCCAGCTTCTGGATCCGTGTGCTGAGGCTGTGCCCTGCTGAGAAGCAGAGCTACCCCTGA
GCTGCGGGTCCTTGGTCCTTGCCGAGGGCTCCCGTGCAAATGCCCAATCAGCCTGGGGGG
CGAGGACCTCCCTGTGCCCTTTTGCTTCCGCTGGCTGCTCAGAGGACGCCACCATGACCA
GAGCTGACAGACCCTGTGACGTGCCAGGTTCCTCCGGGGAATGGTCAGTGGGGCTGGACG
GAAAAACCCTGCAAGCCTGAGGGCCCAGCTGGAGCTTCCAGTCCCAACGGTGCTCCAGGT
GGCCGGGCGTAGGGGAGCAGCCAGGTGCTTGCTGCCAGCCCAACTCAGGTCCCTCCAGCC
AGGGACCCTCGGCTTGCTTTGCCTGAGACCCAGCCTCAAAGGGCTGACCTCGTGAGGTGT
GCACCAGCCACGACCTGTCACGGGACCTCCCAGGACTGCACCCCCAGCGTGTCCTCCCGG
CACTTGCTGCGTCCCCTTCATCCACTTGACCTGGGCCCTTCGCAGGCTCCTCGAGCCCAG
CTTCCCAGTCCTGGACTCGTGGGTGCCCTCAGGCTCCCTGCCCAGCTAGGCCCTCCTCCT
GCTCAGCTTCTCTGGGCCCCGGCTCCCCAGAACCTCTTGCCTGCTGTGCACAGTCTCCCC
GATGAGCCTGCAGCCTCGCCCTTAGCCTGTCTTTCCCCTGACCACCCTCTGCCCCCTTGG
AGCCCCTAATTCTGCAGCCACCAAGCCTGGCAGGCTGTCAGCGTGGCCTTGATCCCACAT
ACCCCCTTCCTGGACCTCCCACCAGACCTAGTGCCCTTTTTTGCCCTGGAGCCCTTGTCC
CCGCACCCCTGGCACCACCAGTTCTTGGTTGTACCTGTTTTGTCATGAATTCCCAAATAT
TGCTTCTACCTTTATGTTTTAATAACCATACCTCCCCTGTAAAATCTTGTTTTCAAAGTA
GGGGGATGTTACACTTTCACAGTGTGACAGTGGTTAGCTGATCTAGAAAGTCCAAATAAA
TCCAAAGCCACGTCAAGTCTCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGCTGCTTCGAGCACCGACACCATGAGTGGTTGCTTGGGCCCGAGGTGGACATTCTC
CCCTTCTTGCTGCTGCCCCTGGCGGGGCCTGAGGACTTCTCAGAGGAAGAGATGGACCGG
CTGCCTGTTGACCTGCAGTACCTTCCGCCAGACAAGCAGCGAGAGCCCGATGCTGACATT
CGAAAGATGCTGATCGAGGCCATCATGCTGCTGACAGCCACAGCACCTGGTCGGAAGCAG
GTGAGGGACCAGGGAGCATACCTGATCCTCCGTGAGCTGCACAGCTGGGAGCCAGAGCCT
GACGTGCAGGTGGCTTGTGAGAAACTCATCCAGGTCCTTATTGGGGATGAACCAGAACAT
GGCCTGGAAAACTTGCTGGAGGTGCAGGTGCCTGAAGATGTTGAGCGGCAGCTGCAGCAG
CAGGACCGCCAGGAGCAGGAGCAGTGCAAGCGGGAGCATCAGGAGTTGGAGCTGGCCCCA
GAGCCACAAGCAGAGGGAGCTGCACCCACCTGAGGCCCCTGAAGCCTCCCACCAGCTCCA
GGCCCACCTTTGCTAACCATCAGTCCAGGCCTCCCAGACCAGGCATGCCTGCAGCGTCCT
GCCAGCTTCTGGATCCGTGTGCTGAGGCTGTGCCCTGCTGAGAAGCAGAGCTACCCCTGA
GCTGCGGGTCCTTGGTCCTTGCCGAGGGCTCCCGTGCAAATGCCCAATCAGCCTGGGGGG
CGAGGACCTCCCTGTGCCCTTTTGCTTCCGCTGGCTGCTCAGAGGACGCCACCATGACCA
GAGCTGACAGACCCTGTGACGTGCCAGGTTCCTCCGGGGAATGGTCAGTGGGGCTGGACG
GAAAAACCCTGCAAGCCTGAGGGCCCAGCTGGAGCTTCCAGTCCCAACGGTGCTCCAGGT
GGCCGGGCGTAGGGGAGCAGCCAGGTGCTTGCTGCCAGCCCAACTCAGGTCCCTCCAGCC
AGGGACCCTCGGCTTGCTTTGCCTGAGACCCAGCCTCAAAGGGCTGACCTCGTGAGGTGT
GCACCAGCCACGACCTGTCACGGGACCTCCCAGGACTGCACCCCCAGCGTGTCCTCCCGG
CACTTGCTGCGTCCCCTTCATCCACTTGACCTGGGCCCTTCGCAGGCTCCTCGAGCCCAG
CTTCCCAGTCCTGGACTCGTGGGTGCCCTCAGGCTCCCTGCCCAGCTAGGCCCTCCTCCT
GCTCAGCTTCTCTGGGCCCCGGCTCCCCAGAACCTCTTGCCTGCTGTGCACAGTCTCCCC
GATGAGCCTGCAGCCTCGCCCTTAGCCTGTCTTTCCCCTGACCACCCTCTGCCCCCTTGG
AGCCCCTAATTCTGCAGCCACCAAGCCTGGCAGGCTGTCAGCGTGGCCTTGATCCCACAT
ACCCCCTTCCTGGACCTCCCACCAGACCTAGTGCCCTTTTTTGCCCTGGAGCCCTTGTCC
CCGCACCCCTGGCACCACCAGTTCTTGGTTGTACCTGTTTTGTCATGAATTCCCAAATAT
TGCTTCTACCTTTATGTTTTAATAACCATACCTCCCCTGTAAAATCTTGTTTTCAAAGTA
GGGGGATGTTACACTTTCACAGTGTGACAGTGGTTAGCTGATCTAGAAAGTCCAAATAAA
TCCAAAGCCACGTCAAGTCTCTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9P0T5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9P0T5_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               370-489, + strand, RNAz p=0.950625
               

               
               976-1090, - strand, RNAz p=0.775846

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               370-489, + strand, RNAz p=0.950625
               

               
               976-1090, - strand, RNAz p=0.775846

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               331-602, gnl|bosTau2|chr14 (116224-115953)
               

               
               331-602, gnl|Hg17|chr8 (145266276-145266542)
               

               
               331-602, gnl|Mm7|chr15 (76453082-76453309)
               


               
               750-1152, gnl|bosTau2|chr14 (115845-115443)
               

               
               750-1152, gnl|Mm7|chr15 (76453375-76453859)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               331-602, gnl|bosTau2|chr14 (116224-115953)
               

               
               331-602, gnl|Hg17|chr8 (145266276-145266542)
               

               
               331-602, gnl|Mm7|chr15 (76453082-76453309)
               


               
               750-1152, gnl|bosTau2|chr14 (115845-115443)
               

               
               750-1152, gnl|Mm7|chr15 (76453375-76453859)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               nbm (0.297974)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               med (0.116252)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.297974)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               med (0.116252)

	370-489, + strand, RNAz p=0.950625
	976-1090, - strand, RNAz p=0.775846

	331-602, gnl\|bosTau2\|chr14 (116224-115953)
	331-602, gnl\|Hg17\|chr8 (145266276-145266542)
	331-602, gnl\|Mm7\|chr15 (76453082-76453309)

	750-1152, gnl\|bosTau2\|chr14 (115845-115443)
	750-1152, gnl\|Mm7\|chr15 (76453375-76453859)

	nbm (0.297974)
	fli (0.202881)
	nep (0.183925)
	eye (0.170503)
	csp (0.161186)
	cag (0.151194)
	lnt (0.142308)
	nca (0.136874)
	thg (0.126791)
	med (0.116252)