Non-Coding RNA Search

Ss1.1-Pig1-126H08.5

Sequence:


               
               CCACCCTCGGCTAGAGGTAGGATATCCCTGAACCCTGGGCTCCCAGCCCTAAAACTCACT
GCCTCCCCGAGGGCCCCCTCTAAGGAGGGTGTGGGGCGCCCTGAGGGCTGCCTCTCTGCC
AGTCAGCCACAGAGACCCTCCTCCTTTCACGAGGAAAAGACCTCCCCCAACCCCCTAAAA
ATGTTTACAGTCTCTGCTGGTCCCTCCATGTAAATACCACAACCACCCGTGCGTTACCCG
GCCCGGCCCGGACGCTGCCATCTCTCTTTCTGGGAGTTTAGACAATGTTTCCCTTGGATT
TTTTTCTCTCTTGATTTCTCCCTTTGCTTTGGGGGGTAACTGGGTATCTGGGAAGAGGGG
TGTGGGGAGGGCTAAAGGGTTTATTACCTGATCATTTTCTTTAGAAAGAGGTTTTAGGGA
GAAGAAATGGGGGTGGGGGTGGGAGTGGTAAGGGGAGAGCGGGGAGTCAGTTTCAGACAC
TTCTCTATGCTTAACTTATTTATTTATTGCATTTTACTTTTAAAGAGTTGGTCTTTTCTG
TCTAAATAAAGAAAAAAGTTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCCTCGGCTAGAGGTAGGATATCCCTGAACCCTGGGCTCCCAGCCCTAAAACTCACT
GCCTCCCCGAGGGCCCCCTCTAAGGAGGGTGTGGGGCGCCCTGAGGGCTGCCTCTCTGCC
AGTCAGCCACAGAGACCCTCCTCCTTTCACGAGGAAAAGACCTCCCCCAACCCCCTAAAA
ATGTTTACAGTCTCTGCTGGTCCCTCCATGTAAATACCACAACCACCCGTGCGTTACCCG
GCCCGGCCCGGACGCTGCCATCTCTCTTTCTGGGAGTTTAGACAATGTTTCCCTTGGATT
TTTTTCTCTCTTGATTTCTCCCTTTGCTTTGGGGGGTAACTGGGTATCTGGGAAGAGGGG
TGTGGGGAGGGCTAAAGGGTTTATTACCTGATCATTTTCTTTAGAAAGAGGTTTTAGGGA
GAAGAAATGGGGGTGGGGGTGGGAGTGGTAAGGGGAGAGCGGGGAGTCAGTTTCAGACAC
TTCTCTATGCTTAACTTATTTATTTATTGCATTTTACTTTTAAAGAGTTGGTCTTTTCTG
TCTAAATAAAGAAAAAAGTTTTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-224, - strand, RNAz p=0.945354

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-224, - strand, RNAz p=0.945354

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               17-118, - strand, RNAmicro p=0.919213

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               17-118, - strand, RNAmicro p=0.919213

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-564, gnl|bosTau2|chr3 (15135188-15135757)
               

               
               1-564, gnl|Hg17|chr1 (148488535-148487957)
               

               
               1-564, gnl|Mm7|chr3 (94365556-94366139)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr3 (15135188-15135757)
               

               
               1-564, gnl|Hg17|chr1 (148488535-148487957)
               

               
               1-564, gnl|Mm7|chr3 (94365556-94366139)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.687916)
               

               
               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.687916)
               

               
               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               pgl (0.118483)

	1-564, gnl\|bosTau2\|chr3 (15135188-15135757)
	1-564, gnl\|Hg17\|chr1 (148488535-148487957)
	1-564, gnl\|Mm7\|chr3 (94365556-94366139)

	ece (0.687916)
	ecc (0.345105)
	fce (0.271592)
	cbe (0.239234)
	pgl (0.118483)