Non-Coding RNA Search

Ss1.1-Pig1-126I12.5

Sequence:


               
               CAGGGCCCTGGGGGAGGGGTCTCACGTCCCCTGGGGAAGCGCCGGAGGCCGGAGCCAGAG
CCCCTGAGGAGGAGGCAGAAGGGGAAACTGGAGGAGCTGGGGCCAGCCTCAGCAGTGCGC
CGTCAGCCCGAGGCCCAGGAGCAGAGGGAGCGGGCTCGTCTGCAGAGGGCGCTGCAGGCT
TCAGTGTCTCCACCGCCCTCCAGCCCTAACCAGAGTTACCAGGGCAGCAGCGGCTACAAC
TTCCGCCCCACGGATGCCCGCTGCCTGCCCAGCAGTCCCATCCGGATGTTCGCTTCCTTC
CACCCCTCTGCCAGCACCGCAGGGACCTCTGGGGACGGTGAACCCCCAGACAGGTCACCC
CTGGAACTTCACATTGGTTTCCCCACAGACATCCCCAAAAGCACCCCCAACTCGATGACT
GCCTCATCCTCCTCAGTCCCAACCCCCTCCCCAAGTCTTCCTAGACGCTCAGCACCTCCT
TCTCCCCTGGGCCGCAGTTTGTCTCCTGGGACTGGGGGAGGAGTCCGAGGCGGGGCTGGC
TACCTGTCCCGAGGGGACCCCGTCCGGGTCCTGGCTCGGAGAGTGCGGCCCGATGGCTCT
GTGCAGTACCTGGTTGAGTGGGGAGGTGGGGGCATCTTCTGAACAGCTTGCCTCTGCCTG
CTTCCCCATTCACACACGCCGGCACTTTCATACCCTGACCTCTGACCTCACCTACAGCTG
GGATGTACCTGGGGCGGTAGCGGGTACTTCTCTCTGCTGCCCAGGCTGGAATCCAGGCGG
GGAGGTCGGGGAAGAGGCCCTCTCTTCTCCACCCCCTTTGTGATTCCTGACCCTCTCCCC
ATTCCTCTTCCCATTTCCTTTGATGTTATTTTGTTACAGCTTTTTAAATATTTTTTAAAA
TTATTTAACCCCTGGGGACGGAGACTGAGGAGGGGAGGAGGATAAAGGATCCTGGGCTCT
GTATGATTGAAATAAAGATACATGAACAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGGCCCTGGGGGAGGGGTCTCACGTCCCCTGGGGAAGCGCCGGAGGCCGGAGCCAGAG
CCCCTGAGGAGGAGGCAGAAGGGGAAACTGGAGGAGCTGGGGCCAGCCTCAGCAGTGCGC
CGTCAGCCCGAGGCCCAGGAGCAGAGGGAGCGGGCTCGTCTGCAGAGGGCGCTGCAGGCT
TCAGTGTCTCCACCGCCCTCCAGCCCTAACCAGAGTTACCAGGGCAGCAGCGGCTACAAC
TTCCGCCCCACGGATGCCCGCTGCCTGCCCAGCAGTCCCATCCGGATGTTCGCTTCCTTC
CACCCCTCTGCCAGCACCGCAGGGACCTCTGGGGACGGTGAACCCCCAGACAGGTCACCC
CTGGAACTTCACATTGGTTTCCCCACAGACATCCCCAAAAGCACCCCCAACTCGATGACT
GCCTCATCCTCCTCAGTCCCAACCCCCTCCCCAAGTCTTCCTAGACGCTCAGCACCTCCT
TCTCCCCTGGGCCGCAGTTTGTCTCCTGGGACTGGGGGAGGAGTCCGAGGCGGGGCTGGC
TACCTGTCCCGAGGGGACCCCGTCCGGGTCCTGGCTCGGAGAGTGCGGCCCGATGGCTCT
GTGCAGTACCTGGTTGAGTGGGGAGGTGGGGGCATCTTCTGAACAGCTTGCCTCTGCCTG
CTTCCCCATTCACACACGCCGGCACTTTCATACCCTGACCTCTGACCTCACCTACAGCTG
GGATGTACCTGGGGCGGTAGCGGGTACTTCTCTCTGCTGCCCAGGCTGGAATCCAGGCGG
GGAGGTCGGGGAAGAGGCCCTCTCTTCTCCACCCCCTTTGTGATTCCTGACCCTCTCCCC
ATTCCTCTTCCCATTTCCTTTGATGTTATTTTGTTACAGCTTTTTAAATATTTTTTAAAA
TTATTTAACCCCTGGGGACGGAGACTGAGGAGGGGAGGAGGATAAAGGATCCTGGGCTCT
GTATGATTGAAATAAAGATACATGAACAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               59-178, + strand, RNAz p=0.8826
               

               
               711-942, - strand, RNAz p=0.999328

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-178, + strand, RNAz p=0.8826
               

               
               711-942, - strand, RNAz p=0.999328

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               770-829, + strand, RNAmicro p=0.999392

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               770-829, + strand, RNAmicro p=0.999392

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-178, gnl|bosTau2|chr23 (5953332-5953509)
               

               
               1-178, gnl|Hg17|chr6 (33490723-33490900)
               

               
               1-178, gnl|Mm7|chr17 (25121301-25121457)
               


               
               352-990, gnl|bosTau2|chr23 (5954188-5954825)
               

               
               352-990, gnl|Hg17|chr6 (33491563-33492194)
               

               
               352-990, gnl|Mm7|chr17 (25122054-25122667)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-178, gnl|bosTau2|chr23 (5953332-5953509)
               

               
               1-178, gnl|Hg17|chr6 (33490723-33490900)
               

               
               1-178, gnl|Mm7|chr17 (25121301-25121457)
               


               
               352-990, gnl|bosTau2|chr23 (5954188-5954825)
               

               
               352-990, gnl|Hg17|chr6 (33491563-33492194)
               

               
               352-990, gnl|Mm7|chr17 (25122054-25122667)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               elu (0.385356)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	59-178, + strand, RNAz p=0.8826
	711-942, - strand, RNAz p=0.999328

	1-178, gnl\|bosTau2\|chr23 (5953332-5953509)
	1-178, gnl\|Hg17\|chr6 (33490723-33490900)
	1-178, gnl\|Mm7\|chr17 (25121301-25121457)

	352-990, gnl\|bosTau2\|chr23 (5954188-5954825)
	352-990, gnl\|Hg17\|chr6 (33491563-33492194)
	352-990, gnl\|Mm7\|chr17 (25122054-25122667)

	elu (0.385356)
	ece (0.229305)
	mas (0.210305)
	nco (0.161734)
	hyp (0.142837)
	ute (0.132784)
	cov (0.132153)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)