Ss1.1-Pig1-126O09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCCGGGCTCTGGAGTCAGAGTATGTGTCCGCCCACCTGCATGAGTGGATTGACCTGAT CTTCGGCTACAAGCAGCGGGGGCCAGCTGCGGAAGAGGCCCTCAATGTCTTCTACTACTG CACTTATGAGGGGGCCGTGGACCTGGACCAAGTAGCAGATGAGCGGGAACGGAAGGCTCT GGAGGGCATTATCAGCAACTTTGGGCAGACTCCCTGTCAGCTGCTAAAGGAGCCACATCC ATCTCGGCTATCAGCTGAGGAAGCAGCCCAGCGCCTTGCACGTGTGGACACTAACTCACC TAGCATCTTCCAGCACCTGAACCAGCTCAAGGCCTTCTTTGCAGAGGTCATCAGTGATGA CGTGCCCCTAGTGCTGGCCATGGTTCCCCACCAGCAGCCTCACTCCTTCATCACCCAGGG CTCCCCAGACCTGTTGGTGACCGTGAGTGCCAATGGGATGCTGGGTACCCACAACTGGTT GCCATATGACCGTAACATAAGCAACTACTTCAGCTTCAGCAAAGACCCCACCATTGGCAA CCCCAAGATGCAGCGACTGCTGAGTGGCCCATGGGTACCTGGCAGTGGCGTGAGTGGGCA AGCTCTGGCAGTGGCCCCCGACGGAAGGCTGCTGTTCAGTGGTGGCCATTGGGATGGTAG CCTGCGAGTGACTGCACTACCCCGGGGCAAGCTATTGAACCAGCTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCCGGGCTCTGGAGTCAGAGTATGTGTCCGCCCACCTGCATGAGTGGATTGACCTGAT CTTCGGCTACAAGCAGCGGGGGCCAGCTGCGGAAGAGGCCCTCAATGTCTTCTACTACTG CACTTATGAGGGGGCCGTGGACCTGGACCAAGTAGCAGATGAGCGGGAACGGAAGGCTCT GGAGGGCATTATCAGCAACTTTGGGCAGACTCCCTGTCAGCTGCTAAAGGAGCCACATCC ATCTCGGCTATCAGCTGAGGAAGCAGCCCAGCGCCTTGCACGTGTGGACACTAACTCACC TAGCATCTTCCAGCACCTGAACCAGCTCAAGGCCTTCTTTGCAGAGGTCATCAGTGATGA CGTGCCCCTAGTGCTGGCCATGGTTCCCCACCAGCAGCCTCACTCCTTCATCACCCAGGG CTCCCCAGACCTGTTGGTGACCGTGAGTGCCAATGGGATGCTGGGTACCCACAACTGGTT GCCATATGACCGTAACATAAGCAACTACTTCAGCTTCAGCAAAGACCCCACCATTGGCAA CCCCAAGATGCAGCGACTGCTGAGTGGCCCATGGGTACCTGGCAGTGGCGTGAGTGGGCA AGCTCTGGCAGTGGCCCCCGACGGAAGGCTGCTGTTCAGTGGTGGCCATTGGGATGGTAG CCTGCGAGTGACTGCACTACCCCGGGGCAAGCTATTGAACCAGCTCAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 544-702, + strand, RNAz p=0.661482 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 544-702, + strand, RNAz p=0.661482 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 228-348, gnl|bosTau2|chr22 (41066786-41066906) | |
| 228-348, gnl|canFam2|chr20 (44809318-44809195) | |
| 228-348, gnl|danRer3|chr16 (9282963-9282843) | |
| 228-348, gnl|echTel1|scaffold_294942 (15985-16108) | |
| 228-348, gnl|fr1|chrUn (65667702-65667584) | |
| 228-348, gnl|galGal2|chr7 (14507016-14506893) | |
| 228-348, gnl|hg17|chr3 (47022826-47022949) | |
| 228-348, gnl|Hg17|chr3 (47022825-47022945) | |
| 228-348, gnl|loxAfr1|scaffold_71181 (1285-1162) | |
| 228-348, gnl|mm7|chr9 (110325628-110325505) | |
| 228-348, gnl|Mm7|chr9 (110325627-110325507) | |
| 228-348, gnl|monDom2|scaffold_5 (81408106-81408228) | |
| 228-348, gnl|oryCun1|scaffold_206213 (149555-149678) | |
| 228-348, gnl|panTro1|chr2 (48480962-48481085) | |
| 228-348, gnl|rheMac2|chr2 (89534894-89534771) | |
| 228-348, gnl|rn3|chr8 (115028081-115027958) | |
| 228-348, gnl|tetNig1|chr8 (6860982-6861100) | |
| 228-348, gnl|xenTro1|scaffold_1568 (34594-34716) | |
| 544-706, gnl|bosTau2|chr22 (41067882-41068044) | |
| 544-706, gnl|canFam2|chr20 (44808138-44807942) | |
| 544-706, gnl|danRer3|chr16 (9279607-9279411) | |
| 544-706, gnl|dasNov1|scaffold_204053 (4432-4236) | |
| 544-706, gnl|echTel1|scaffold_294942 (17162-17351) | |
| 544-706, gnl|fr1|chrUn (65666702-65666512) | |
| 544-706, gnl|galGal2|chr7 (14504788-14504611) | |
| 544-706, gnl|hg17|chr3 (47024016-47024212) | |
| 544-706, gnl|Hg17|chr3 (47024016-47024178) | |
| 544-706, gnl|loxAfr1|scaffold_3205 (111759-111563) | |
| 544-706, gnl|mm7|chr9 (110324612-110324416) | |
| 544-706, gnl|Mm7|chr9 (110324610-110324448) | |
| 544-706, gnl|monDom2|scaffold_5 (81409388-81409584) | |
| 544-706, gnl|oryCun1|scaffold_206213 (151092-151287) | |
| 544-706, gnl|panTro1|chr2 (48482160-48482356) | |
| 544-706, gnl|rheMac2|chr2 (89533697-89533506) | |
| 544-706, gnl|rn3|chr8 (115027059-115026863) | |
| 544-706, gnl|tetNig1|chr8 (6861991-6862181) | |
| 544-706, gnl|xenTro1|scaffold_1568 (36339-36518) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 228-348, gnl|bosTau2|chr22 (41066786-41066906) | |
| 228-348, gnl|canFam2|chr20 (44809318-44809195) | |
| 228-348, gnl|danRer3|chr16 (9282963-9282843) | |
| 228-348, gnl|echTel1|scaffold_294942 (15985-16108) | |
| 228-348, gnl|fr1|chrUn (65667702-65667584) | |
| 228-348, gnl|galGal2|chr7 (14507016-14506893) | |
| 228-348, gnl|hg17|chr3 (47022826-47022949) | |
| 228-348, gnl|Hg17|chr3 (47022825-47022945) | |
| 228-348, gnl|loxAfr1|scaffold_71181 (1285-1162) | |
| 228-348, gnl|mm7|chr9 (110325628-110325505) | |
| 228-348, gnl|Mm7|chr9 (110325627-110325507) | |
| 228-348, gnl|monDom2|scaffold_5 (81408106-81408228) | |
| 228-348, gnl|oryCun1|scaffold_206213 (149555-149678) | |
| 228-348, gnl|panTro1|chr2 (48480962-48481085) | |
| 228-348, gnl|rheMac2|chr2 (89534894-89534771) | |
| 228-348, gnl|rn3|chr8 (115028081-115027958) | |
| 228-348, gnl|tetNig1|chr8 (6860982-6861100) | |
| 228-348, gnl|xenTro1|scaffold_1568 (34594-34716) | |
| 544-706, gnl|bosTau2|chr22 (41067882-41068044) | |
| 544-706, gnl|canFam2|chr20 (44808138-44807942) | |
| 544-706, gnl|danRer3|chr16 (9279607-9279411) | |
| 544-706, gnl|dasNov1|scaffold_204053 (4432-4236) | |
| 544-706, gnl|echTel1|scaffold_294942 (17162-17351) | |
| 544-706, gnl|fr1|chrUn (65666702-65666512) | |
| 544-706, gnl|galGal2|chr7 (14504788-14504611) | |
| 544-706, gnl|hg17|chr3 (47024016-47024212) | |
| 544-706, gnl|Hg17|chr3 (47024016-47024178) | |
| 544-706, gnl|loxAfr1|scaffold_3205 (111759-111563) | |
| 544-706, gnl|mm7|chr9 (110324612-110324416) | |
| 544-706, gnl|Mm7|chr9 (110324610-110324448) | |
| 544-706, gnl|monDom2|scaffold_5 (81409388-81409584) | |
| 544-706, gnl|oryCun1|scaffold_206213 (151092-151287) | |
| 544-706, gnl|panTro1|chr2 (48482160-48482356) | |
| 544-706, gnl|rheMac2|chr2 (89533697-89533506) | |
| 544-706, gnl|rn3|chr8 (115027059-115026863) | |
| 544-706, gnl|tetNig1|chr8 (6861991-6862181) | |
| 544-706, gnl|xenTro1|scaffold_1568 (36339-36518) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |