Non-Coding RNA Search

Ss1.1-Pig1-129F04.5

Sequence:


               
               TTCCGGCCCCTCTGGCGCCTGCCGCGCATTATGGCCGCGCGGTCGCCTTTGCGGGTCCTG
TGCTTGGCGGGCTTCCGGCAGAGCGAGCGGGGCTTCCGCGAGAAGACCGGAGCGTTGCGG
AAAGCGCTGCGGGGCCGCGCCGAGCTCGTGTGCCTCAGCGGCCCGCACCCGGTCTTGGAC
ACAGCGAGCTCCGAGGGCGCCGGGCTAGACGCCGGGCCCTGCCCTGCGGAGGAGCAGCCT
CGAGGTTGGTGGTTTTCAGAACAGGAGGCTGACGTTTTCTCAGCTCTGGAAGAGCCCACC
GTGTGCCGAGGTCTGGAGGAAGCCCTGGGAACGGTGGCACAGGCACTGAAGAAACTGGGG
CCTTTTGATGGGATCCTTGGTTTCAGCCAGGGGGCCGCGCTAGCAGCCCTTGTGTGTGCT
CTTGGACAAGCTGGAGATCCCCGCTTCCCTTTGCCCCGGTTTATCATCCTGGTGTCTGGC
TTCTGTCCCCGGGGTCTTGGCCTCAAGGAACCCATCCTGCAGGGCCCCTTGTCATTGCCT
TCGCTCCATGTTTTTGGGGACACCGACCGCGTCATCCCCTCTCAGGAGAGCATGCAGCTG
TGTAGCCGGTTCGCTGGAGCTATCACCCTCACCCACTCGGGGGGCCACTTCATTCCAGCC
GCAGCACCTCAGCGCCAGGCCTACCTCAAGTTCTTGGACCAGTTCTCAGAGTAAAGATCA
ACAAAACCTTTGGCTCTGCATACCCTCTCCACCCCCACCCCCAGTGGGGACACATGACCT
TGGTGCAGCCTTTATCATCTCTGCCCTCCCCCACTGTCCCCTACCTGGGGCCTCCACTGC
TGTTAGTGCTCCTCACCATCACTAATCAAGAGACAAGTATCAAATTATACAAGTCCAGCT
CTGCACTCGAGAAGGGGCTTAGGAGACCCTAATGGACTTTGACCTCAGCATCTGATATTC
AAACATGAAAAAGGTCAGTGGAGCCCTGGATGAGTAGAGGGTGGCCCAGGAAAGGCAGAG
ACTGGCAAGCACTGTGACTGCCACACAATAAAGTGGTGATTGGATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGGCCCCTCTGGCGCCTGCCGCGCATTATGGCCGCGCGGTCGCCTTTGCGGGTCCTG
TGCTTGGCGGGCTTCCGGCAGAGCGAGCGGGGCTTCCGCGAGAAGACCGGAGCGTTGCGG
AAAGCGCTGCGGGGCCGCGCCGAGCTCGTGTGCCTCAGCGGCCCGCACCCGGTCTTGGAC
ACAGCGAGCTCCGAGGGCGCCGGGCTAGACGCCGGGCCCTGCCCTGCGGAGGAGCAGCCT
CGAGGTTGGTGGTTTTCAGAACAGGAGGCTGACGTTTTCTCAGCTCTGGAAGAGCCCACC
GTGTGCCGAGGTCTGGAGGAAGCCCTGGGAACGGTGGCACAGGCACTGAAGAAACTGGGG
CCTTTTGATGGGATCCTTGGTTTCAGCCAGGGGGCCGCGCTAGCAGCCCTTGTGTGTGCT
CTTGGACAAGCTGGAGATCCCCGCTTCCCTTTGCCCCGGTTTATCATCCTGGTGTCTGGC
TTCTGTCCCCGGGGTCTTGGCCTCAAGGAACCCATCCTGCAGGGCCCCTTGTCATTGCCT
TCGCTCCATGTTTTTGGGGACACCGACCGCGTCATCCCCTCTCAGGAGAGCATGCAGCTG
TGTAGCCGGTTCGCTGGAGCTATCACCCTCACCCACTCGGGGGGCCACTTCATTCCAGCC
GCAGCACCTCAGCGCCAGGCCTACCTCAAGTTCTTGGACCAGTTCTCAGAGTAAAGATCA
ACAAAACCTTTGGCTCTGCATACCCTCTCCACCCCCACCCCCAGTGGGGACACATGACCT
TGGTGCAGCCTTTATCATCTCTGCCCTCCCCCACTGTCCCCTACCTGGGGCCTCCACTGC
TGTTAGTGCTCCTCACCATCACTAATCAAGAGACAAGTATCAAATTATACAAGTCCAGCT
CTGCACTCGAGAAGGGGCTTAGGAGACCCTAATGGACTTTGACCTCAGCATCTGATATTC
AAACATGAAAAAGGTCAGTGGAGCCCTGGATGAGTAGAGGGTGGCCCAGGAAAGGCAGAG
ACTGGCAAGCACTGTGACTGCCACACAATAAAGTGGTGATTGGATTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1438797|gb|AAB36422.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1438797|gb|AAB36422.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               253-492, + strand, RNAz p=0.971773

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               253-492, + strand, RNAz p=0.971773

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC003099, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC003099, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               214-952, gnl|bosTau2|chr19 (17601891-17602632)
               

               
               214-952, gnl|Hg17|chr17 (1892648-1893392)
               

               
               214-952, gnl|Mm7|chr11 (75259962-75259348)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               214-952, gnl|bosTau2|chr19 (17601891-17602632)
               

               
               214-952, gnl|Hg17|chr17 (1892648-1893392)
               

               
               214-952, gnl|Mm7|chr11 (75259962-75259348)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               clu (0.239292)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nje (0.16592)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nje (0.16592)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	214-952, gnl\|bosTau2\|chr19 (17601891-17602632)
	214-952, gnl\|Hg17\|chr17 (1892648-1893392)
	214-952, gnl\|Mm7\|chr11 (75259962-75259348)

	clu (0.239292)
	ecc (0.23007)
	ece (0.229305)
	nje (0.16592)
	pgl (0.118483)
	med (0.116252)
	nbm (0.0993246)
	eje (0.0988338)