Non-Coding RNA Search

Ss1.1-Pig1-129I22.5

Sequence:


               
               GCCTGGTCTTGGCCTTGCTGGGGGGGATCCTGTGGGGCCTGAAGCTTGTCCTCTACCTGG
CCACCTTCGTAGCGCTGGTGAGGTCAGTGCCCGACCCTTCCACCCGGGCACTGCTCCTCC
TGGCCCTGCTGACCCTCTACGCCTTGCTGAGCCGGCTCACTGGCACTCGGGCCTCGGGGG
CCCAGCTGGAGGCCAAGGTGCGGGGGCTGGAGCGCCAGGTGGAGGAGCTGCGCTGGCGGC
AGAGGCGCGCAGCCAAGGGGCCCCGCAGCGTGGAGGAGGAGTGACAGGAACGCTGCCAGA
GGACGCCGCCTTCGTCCTACCAAAGAGCTGAGTTGCTTCTGGGACGCACAGCCCTCCTTC
CAGCCCCCTGCCCCTTTCTTGCCCTGTCTCTGAATCGCCAGCACCTTTTTCTTGGCACCA
GATCCCATGGCTGAGAGAGGCAGGCCGAACCCCGATGGGCCTCAGGGGCCCTGTCTCCCA
AGGGTCTCTGCCTGGGGTCGGTTCTCTTAACCCTTTCTCTGTCCCCAGCCTGTCTGAGCC
AGGGCAGGTTGGGGGGCCTCCCGCCAGCTTCCGCGTCTGCCCCGGGCCAACGTCACTGCC
CACGGCCTCCGGGGCCTCAGCACCACCTTGCCTTTCTCCCAGTGCTCTTGCTGTCCTGTC
CTTCTCTAGCTCCGCCTTTGCCAAGTCCCCGGCCTCCTGCCTCATGGGCAGTCTTCTCCC
AGCCCTGCCCTCCAGCCAGACCACAGTCTCTGCAGGCATGCTCCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGGTCTTGGCCTTGCTGGGGGGGATCCTGTGGGGCCTGAAGCTTGTCCTCTACCTGG
CCACCTTCGTAGCGCTGGTGAGGTCAGTGCCCGACCCTTCCACCCGGGCACTGCTCCTCC
TGGCCCTGCTGACCCTCTACGCCTTGCTGAGCCGGCTCACTGGCACTCGGGCCTCGGGGG
CCCAGCTGGAGGCCAAGGTGCGGGGGCTGGAGCGCCAGGTGGAGGAGCTGCGCTGGCGGC
AGAGGCGCGCAGCCAAGGGGCCCCGCAGCGTGGAGGAGGAGTGACAGGAACGCTGCCAGA
GGACGCCGCCTTCGTCCTACCAAAGAGCTGAGTTGCTTCTGGGACGCACAGCCCTCCTTC
CAGCCCCCTGCCCCTTTCTTGCCCTGTCTCTGAATCGCCAGCACCTTTTTCTTGGCACCA
GATCCCATGGCTGAGAGAGGCAGGCCGAACCCCGATGGGCCTCAGGGGCCCTGTCTCCCA
AGGGTCTCTGCCTGGGGTCGGTTCTCTTAACCCTTTCTCTGTCCCCAGCCTGTCTGAGCC
AGGGCAGGTTGGGGGGCCTCCCGCCAGCTTCCGCGTCTGCCCCGGGCCAACGTCACTGCC
CACGGCCTCCGGGGCCTCAGCACCACCTTGCCTTTCTCCCAGTGCTCTTGCTGTCCTGTC
CTTCTCTAGCTCCGCCTTTGCCAAGTCCCCGGCCTCCTGCCTCATGGGCAGTCTTCTCCC
AGCCCTGCCCTCCAGCCAGACCACAGTCTCTGCAGGCATGCTCCCCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               399-615, - strand, RNAz p=0.993457

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-615, - strand, RNAz p=0.993457

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               422-532, + strand, RNAmicro p=0.937189

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               422-532, + strand, RNAmicro p=0.937189

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-764, gnl|bosTau2|chr29 (28319772-28319005)
               

               
               1-764, gnl|Hg17|chr11 (60445930-60446708)
               

               
               1-764, gnl|Mm7|chr19 (10552166-10551454)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-764, gnl|bosTau2|chr29 (28319772-28319005)
               

               
               1-764, gnl|Hg17|chr11 (60445930-60446708)
               

               
               1-764, gnl|Mm7|chr19 (10552166-10551454)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nlu (0.191681)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	1-764, gnl\|bosTau2\|chr29 (28319772-28319005)
	1-764, gnl\|Hg17\|chr11 (60445930-60446708)
	1-764, gnl\|Mm7\|chr19 (10552166-10551454)

	nlu (0.191681)
	nca (0.136874)
	nmm (0.132802)
	ese (0.126502)
	eep (0.122564)
	cty (0.10408)