Non-Coding RNA Search

Ss1.1-Pig1-129J22.5

Sequence:


               
               TGTTTGCTCTTCGCACATCTCGGTAGTCCTGTGTTTTCCAAAGTAGAGCGTGTCCACTAG
GGTCCAGGTCCCAGGAGCTCAGCGTGAGGCCCCCTGTGGGCAGGTGACCCGGTCGTCTTT
ACTGTCTGCCGGGCGGAGCGGGTTGTCGCCAGGGAGCCAGGCGGTGGGGGCGGAGACCCG
GACGTCTCCCTGGTGTTTCTCTGGCCTTGGGAGACCCGGGCCGCAGGTGGTCGGTCCCGC
TGGGGCCCCAAGCAGTGCTTGCCTTTCATTTCTGCTGCGGCTGCTGTGTGTAGTCTGTCT
CGTGAGCGCGTGCGGAAGGGGTGAAGCCCGGACGGCTGTTCCACTCCTGCGATTCGCGGT
GGCGGCTCCTAACTCAGTCCCCTTAGACCAGGGCGGTAACCTTCAACAGCAAACTCAACG
ACTCAATTGGTAAACGCAAAAGCTGGCGCCACTCCCAAGGATGTCTCTGCGAATCCCCTG
TAGCATCACACCCGTGGGGAAGGACTCACGGCCGAGCAGCTTCTGTGGTGAAGGAAGTGT
GCGCTCCTCGGAGACACCGGGCAGCGTTTCCAGAGTCGGTTCTTTCTCTGACGGCACACC
TCTTCGTTCAGTTCTGTTACCCAAACAAAGACCAAAGAAGGCCAATCTCTCATTTGACTC
TTCTCAACCTGCCTGTGTTAAAACTCGCGTCTGTAGTAACCGCTCGCTGTGAGGACCCAT
CTCGACCGTCCAAGTGATTGCGACCAGTGACTCACGTCCCGTGTTTTCCTGCTCTTCTGA
GAAAAAGACAAAAATCTAAGTTATTGCTCAGCAATAATCATGTTGTTACTGTGGATGAAC
AACATGTCTGATTTCCCGACAGCATTATTATGTTTTATATTTGTGTTTACTGTATATCGT
GTGTGGTTTTATTTGGTATTTATTTGTGTTTTGAGGTCTTGCAATGTTTTTGTGTTTCCG
ATGCTAATAACTAAAGTTTGTAAGAGTGTAGAATGCAAAACTTTGAAATGCTAAACTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTGCTCTTCGCACATCTCGGTAGTCCTGTGTTTTCCAAAGTAGAGCGTGTCCACTAG
GGTCCAGGTCCCAGGAGCTCAGCGTGAGGCCCCCTGTGGGCAGGTGACCCGGTCGTCTTT
ACTGTCTGCCGGGCGGAGCGGGTTGTCGCCAGGGAGCCAGGCGGTGGGGGCGGAGACCCG
GACGTCTCCCTGGTGTTTCTCTGGCCTTGGGAGACCCGGGCCGCAGGTGGTCGGTCCCGC
TGGGGCCCCAAGCAGTGCTTGCCTTTCATTTCTGCTGCGGCTGCTGTGTGTAGTCTGTCT
CGTGAGCGCGTGCGGAAGGGGTGAAGCCCGGACGGCTGTTCCACTCCTGCGATTCGCGGT
GGCGGCTCCTAACTCAGTCCCCTTAGACCAGGGCGGTAACCTTCAACAGCAAACTCAACG
ACTCAATTGGTAAACGCAAAAGCTGGCGCCACTCCCAAGGATGTCTCTGCGAATCCCCTG
TAGCATCACACCCGTGGGGAAGGACTCACGGCCGAGCAGCTTCTGTGGTGAAGGAAGTGT
GCGCTCCTCGGAGACACCGGGCAGCGTTTCCAGAGTCGGTTCTTTCTCTGACGGCACACC
TCTTCGTTCAGTTCTGTTACCCAAACAAAGACCAAAGAAGGCCAATCTCTCATTTGACTC
TTCTCAACCTGCCTGTGTTAAAACTCGCGTCTGTAGTAACCGCTCGCTGTGAGGACCCAT
CTCGACCGTCCAAGTGATTGCGACCAGTGACTCACGTCCCGTGTTTTCCTGCTCTTCTGA
GAAAAAGACAAAAATCTAAGTTATTGCTCAGCAATAATCATGTTGTTACTGTGGATGAAC
AACATGTCTGATTTCCCGACAGCATTATTATGTTTTATATTTGTGTTTACTGTATATCGT
GTGTGGTTTTATTTGGTATTTATTTGTGTTTTGAGGTCTTGCAATGTTTTTGTGTTTCCG
ATGCTAATAACTAAAGTTTGTAAGAGTGTAGAATGCAAAACTTTGAAATGCTAAACTGTC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-483, gnl|bosTau2|chr21 (47074656-47075127)
               

               
               1-483, gnl|Hg17|chr14 (102446490-102447051)
               

               
               1-483, gnl|Mm7|chr12 (108782519-108783035)
               


               
               517-1020, gnl|bosTau2|chr21 (47075134-47075648)
               

               
               517-1020, gnl|Hg17|chr14 (102447054-102447554)
               

               
               517-1020, gnl|Mm7|chr12 (108783045-108783537)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-483, gnl|bosTau2|chr21 (47074656-47075127)
               

               
               1-483, gnl|Hg17|chr14 (102446490-102447051)
               

               
               1-483, gnl|Mm7|chr12 (108782519-108783035)
               


               
               517-1020, gnl|bosTau2|chr21 (47075134-47075648)
               

               
               517-1020, gnl|Hg17|chr14 (102447054-102447554)
               

               
               517-1020, gnl|Mm7|chr12 (108783045-108783537)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               aor (0.390549)
               

               
               sin (0.349895)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               sin (0.349895)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-483, gnl\|bosTau2\|chr21 (47074656-47075127)
	1-483, gnl\|Hg17\|chr14 (102446490-102447051)
	1-483, gnl\|Mm7\|chr12 (108782519-108783035)

	517-1020, gnl\|bosTau2\|chr21 (47075134-47075648)
	517-1020, gnl\|Hg17\|chr14 (102447054-102447554)
	517-1020, gnl\|Mm7\|chr12 (108783045-108783537)

	aor (0.390549)
	sin (0.349895)
	cmu (0.186393)
	sto (0.179824)
	gul (0.177588)
	fbs (0.175346)
	rec (0.17307)
	cki (0.165235)
	pty (0.142714)
	csk (0.140746)
	ssp (0.13552)
	nmm (0.132802)
	kid (0.129735)
	tra (0.123092)
	spc (0.113366)