Non-Coding RNA Search

Ss1.1-Pig1-129K03.5

Sequence:


               
               GACCTCCCCTGACACGCAGCCCCCGCCCCGAGCCGTTGCGGGGGTCGATCATGAATGTCT
GAAGAGCGGCCTTCTCCCTTCGCCCCGTGCCCCTTTCCGTGGCTGGATGGGGAGACGGGG
GTCGGGGCTCCCCCCACCCCCAGCCTCTGCAGACCATGACTACTGCACCTGGACAGCCTC
CTCTTTTCTAGAAGTCTATTTATATTGCCATTTTATAACACTCGAGCCCCCATCTGGGGC
CAGATGGGCCCTGTCCCGCCGGGTGGCACTGGGGACAGAACTATTGCTTGAAGAATCAGG
TTCCTGCCCCCTCGGAGCAGCCCCGCCCTCTCCTCCGTCAAGTTAGTTTTACAATTAAAA
CATTTTCTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTCCCCTGACACGCAGCCCCCGCCCCGAGCCGTTGCGGGGGTCGATCATGAATGTCT
GAAGAGCGGCCTTCTCCCTTCGCCCCGTGCCCCTTTCCGTGGCTGGATGGGGAGACGGGG
GTCGGGGCTCCCCCCACCCCCAGCCTCTGCAGACCATGACTACTGCACCTGGACAGCCTC
CTCTTTTCTAGAAGTCTATTTATATTGCCATTTTATAACACTCGAGCCCCCATCTGGGGC
CAGATGGGCCCTGTCCCGCCGGGTGGCACTGGGGACAGAACTATTGCTTGAAGAATCAGG
TTCCTGCCCCCTCGGAGCAGCCCCGCCCTCTCCTCCGTCAAGTTAGTTTTACAATTAAAA
CATTTTCTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               229-334, - strand, RNAz p=0.981329

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-334, - strand, RNAz p=0.981329

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-373, gnl|bosTau2|chr18 (42334900-42334526)
               

               
               1-373, gnl|Hg17|chr19 (44361498-44361882)
               

               
               1-373, gnl|Mm7|chr7 (25493077-25492723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-373, gnl|bosTau2|chr18 (42334900-42334526)
               

               
               1-373, gnl|Hg17|chr19 (44361498-44361882)
               

               
               1-373, gnl|Mm7|chr7 (25493077-25492723)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               cly (0.120642)

	1-373, gnl\|bosTau2\|chr18 (42334900-42334526)
	1-373, gnl\|Hg17\|chr19 (44361498-44361882)
	1-373, gnl\|Mm7\|chr7 (25493077-25492723)