Non-Coding RNA Search

Ss1.1-Pig1-129O20.5

Sequence:


               
               ATTCTCCTTCCCTTTATTTGGACTTCAGGACCTTGGAGGGCCTGGCCCCCTTAGATGCTG
CTGGTCTGAGGCTCTTTCAGAGCAGAGCCGGGAATGGGGCTAGGCTGACCAACAGCTGCA
ACTGCTGGAGGTGGGTGGGGGTTCTGACAGGAGTGCCAGCCAGCTACTCCAGTAGGGTCC
TGGGTCCCCAGAGCTGAAGAGATCTTCAGGGACAGACTGAATAACTCAGTTTTAAGTTGG
AGGACAGGCCAGGTGCCATTGTGCTTCCCAGGGGGCGCCACCCTTTCTCAGTGCCTGGAG
CAAGCCACCTCTCTACAGGCAGGATGCCTTTCCTAGAGTGGGAGCATCAGGCCGGGGGTG
GGGGGATGTAAGGCTGAGAGGCGAGCATCTAGTCCTGACTGAGACCTCTGCCAGCCACGG
CTGCTCCCACGGCTGCTGCCCTGGGAATAGGTGAGGGCTTCCGAGACGCTCACCAGCTCC
ATTCCCTCCACCACCCCAGGTGCTCAGCAGGGAGACCCCCTCTCCCGCTATATCTTCAGG
AAGGCAGGGGAGATGCTGGGCAGACACGTTGTGGCAGTGCTGCCTGAGATCGACCCGGTG
AGTTGAGGTGGGAAGTGGAGGTTGGGAGCTGCAGGGCCAGACCTGGCCCTTTTCCAGCAG
GGATGGGACCACCCCATCCAGCTCTGTGTCAGTGGGATGCGATTTTAAAGGGACTTAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTCCTTCCCTTTATTTGGACTTCAGGACCTTGGAGGGCCTGGCCCCCTTAGATGCTG
CTGGTCTGAGGCTCTTTCAGAGCAGAGCCGGGAATGGGGCTAGGCTGACCAACAGCTGCA
ACTGCTGGAGGTGGGTGGGGGTTCTGACAGGAGTGCCAGCCAGCTACTCCAGTAGGGTCC
TGGGTCCCCAGAGCTGAAGAGATCTTCAGGGACAGACTGAATAACTCAGTTTTAAGTTGG
AGGACAGGCCAGGTGCCATTGTGCTTCCCAGGGGGCGCCACCCTTTCTCAGTGCCTGGAG
CAAGCCACCTCTCTACAGGCAGGATGCCTTTCCTAGAGTGGGAGCATCAGGCCGGGGGTG
GGGGGATGTAAGGCTGAGAGGCGAGCATCTAGTCCTGACTGAGACCTCTGCCAGCCACGG
CTGCTCCCACGGCTGCTGCCCTGGGAATAGGTGAGGGCTTCCGAGACGCTCACCAGCTCC
ATTCCCTCCACCACCCCAGGTGCTCAGCAGGGAGACCCCCTCTCCCGCTATATCTTCAGG
AAGGCAGGGGAGATGCTGGGCAGACACGTTGTGGCAGTGCTGCCTGAGATCGACCCGGTG
AGTTGAGGTGGGAAGTGGAGGTTGGGAGCTGCAGGGCCAGACCTGGCCCTTTTCCAGCAG
GGATGGGACCACCCCATCCAGCTCTGTGTCAGTGGGATGCGATTTTAAAGGGACTTAGTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               44-161, - strand, RNAz p=0.991154
               

               
               514-632, + strand, RNAz p=0.518989

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-161, - strand, RNAz p=0.991154
               

               
               514-632, + strand, RNAz p=0.518989

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               560-682, + strand, RNAmicro p=0.999677

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               560-682, + strand, RNAmicro p=0.999677

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK092876, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK092876, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               44-718, gnl|bosTau2|chr11 (10024140-10024827)
               

               
               44-718, gnl|Hg17|chr2 (71214907-71215606)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-718, gnl|bosTau2|chr11 (10024140-10024827)
               

               
               44-718, gnl|Hg17|chr2 (71214907-71215606)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	44-161, - strand, RNAz p=0.991154
	514-632, + strand, RNAz p=0.518989

	44-718, gnl\|bosTau2\|chr11 (10024140-10024827)
	44-718, gnl\|Hg17\|chr2 (71214907-71215606)