Non-Coding RNA Search

Ss1.1-Pig1-12H08.5

Sequence:


               
               GCCAGCATCCTGCTTCTGGCTCCTGCACCATGAAAATCCTGTTCTGTGACCTCCTGCTGC
TCAGCCTCTTCTCCAGCAGCGTGTCCAGCAGCTGTCAGAAGGACTGTCTGGCCTGCAGAG
AGAAGCTCCGCCCAGTTCTTGACAGCTTCAACCTTGAGGTGTGCATCCTCGAGTGTGAAG
GGAAGGTCTTCACCAGTCCCCTCTGGACTCCATGCACCAAGGTCATGGCCAAAGGCTCCT
CCTGGCAGCTCAGCCCTGCCGACCCAGACCACGTGGCGGCCACTCTTTACCAGCCAAGAG
CCTCTGAGATGCAGCATCTGAAGCGGATGCCCCGTGTCCGGAGCCTCTTCCAAGCCCAGG
AAGGGACCAAGCCCGGCATGGATGAGGCTGGAGGGACGGAGCAGAAGCAGCTGCAGAAGA
GGTTCGGGGGCTTCACGGGGGCCCGGAAGTCGGCCCGGAAGTTGGCCAACCAAAAGCGGT
TCAGTGAGTTTATGAGGCAGTACCTGGTCCTGAGCCTGCAGTCCAGCCAGCGCCGGCGCA
CCCTGCACCAGAATGGTAATGCGTAGCCGGAAGGGGAGCCCCTCCCAGCTGCACCGTCCA
CTTCAACCCCATGAGTGTCCGGGCAATCCCCAAATCAGCATGTCTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGCATCCTGCTTCTGGCTCCTGCACCATGAAAATCCTGTTCTGTGACCTCCTGCTGC
TCAGCCTCTTCTCCAGCAGCGTGTCCAGCAGCTGTCAGAAGGACTGTCTGGCCTGCAGAG
AGAAGCTCCGCCCAGTTCTTGACAGCTTCAACCTTGAGGTGTGCATCCTCGAGTGTGAAG
GGAAGGTCTTCACCAGTCCCCTCTGGACTCCATGCACCAAGGTCATGGCCAAAGGCTCCT
CCTGGCAGCTCAGCCCTGCCGACCCAGACCACGTGGCGGCCACTCTTTACCAGCCAAGAG
CCTCTGAGATGCAGCATCTGAAGCGGATGCCCCGTGTCCGGAGCCTCTTCCAAGCCCAGG
AAGGGACCAAGCCCGGCATGGATGAGGCTGGAGGGACGGAGCAGAAGCAGCTGCAGAAGA
GGTTCGGGGGCTTCACGGGGGCCCGGAAGTCGGCCCGGAAGTTGGCCAACCAAAAGCGGT
TCAGTGAGTTTATGAGGCAGTACCTGGTCCTGAGCCTGCAGTCCAGCCAGCGCCGGCGCA
CCCTGCACCAGAATGGTAATGCGTAGCCGGAAGGGGAGCCCCTCCCAGCTGCACCGTCCA
CTTCAACCCCATGAGTGTCCGGGCAATCCCCAAATCAGCATGTCTCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12700043|gb|AAG38262.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12700043|gb|AAG38262.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               196-315, - strand, RNAz p=0.625794
               

               
               483-602, - strand, RNAz p=0.513796

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-315, - strand, RNAz p=0.625794
               

               
               483-602, - strand, RNAz p=0.513796

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               157-617, gnl|bosTau2|chr8 (5436908-5436452)
               

               
               157-617, gnl|Hg17|chr8 (28252474-28252930)
               

               
               157-617, gnl|Mm7|chr14 (60265371-60264884)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-617, gnl|bosTau2|chr8 (5436908-5436452)
               

               
               157-617, gnl|Hg17|chr8 (28252474-28252930)
               

               
               157-617, gnl|Mm7|chr14 (60265371-60264884)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	196-315, - strand, RNAz p=0.625794
	483-602, - strand, RNAz p=0.513796

	157-617, gnl\|bosTau2\|chr8 (5436908-5436452)
	157-617, gnl\|Hg17\|chr8 (28252474-28252930)
	157-617, gnl\|Mm7\|chr14 (60265371-60264884)