Non-Coding RNA Search

Ss1.1-Pig1-12M24.5

Sequence:


               
               GCTGAGGGCGGGGGTCTGGAGGAGGGTGTCAGCCTGGGGCCTGGCCCTGCCCCTGACACG
GACACGCTGAGCCTGCTAAGCCTGCGCACTGTGGCTTCAGACCTGCAGAAGTGCGACTCT
GTGGAGCACCTGAGGGGCCTCTCGGACCACACCAGTCTGGATGGCCAGGAGCTGGGTCCT
AGGAGTGGGAGCCGTGGGGGCCGCCACCAGCGCAGTATCAGCCTGTAGCCCTGTGCTCAG
GGAGGCTGGTGCGACTCTTACCATCACTGGCCCGTTGAGGGCTCTGCAGGCTCCTAGCTC
CCTCTCCTTGGGTCCTTGCTTCCCTCAGAGAGGTGGTCTCGTCTGAGTCTGTCCTGTCTG
TCCTGGCTTTCTTACCCTGCCCTGCCCCTCACAGGTGGCAGCTCTCTTTGCCTTACCCCT
TCAGAAGGCTTGTCTTTGGCTCTCACATCTCCCCTCCCCCATGGGTTCCTCACAGTTTCT
CTGATACTCTTTGCTGTCTTCTTTCTGACTTCTTTCATCTGTCTGGTTTTTCCCCTCAGG
GAAATTTGTCTAGAAGGCACAGGGAAGCCATCAGAGAAGGTGGGCACTGGGCCTGGGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGAGGGCGGGGGTCTGGAGGAGGGTGTCAGCCTGGGGCCTGGCCCTGCCCCTGACACG
GACACGCTGAGCCTGCTAAGCCTGCGCACTGTGGCTTCAGACCTGCAGAAGTGCGACTCT
GTGGAGCACCTGAGGGGCCTCTCGGACCACACCAGTCTGGATGGCCAGGAGCTGGGTCCT
AGGAGTGGGAGCCGTGGGGGCCGCCACCAGCGCAGTATCAGCCTGTAGCCCTGTGCTCAG
GGAGGCTGGTGCGACTCTTACCATCACTGGCCCGTTGAGGGCTCTGCAGGCTCCTAGCTC
CCTCTCCTTGGGTCCTTGCTTCCCTCAGAGAGGTGGTCTCGTCTGAGTCTGTCCTGTCTG
TCCTGGCTTTCTTACCCTGCCCTGCCCCTCACAGGTGGCAGCTCTCTTTGCCTTACCCCT
TCAGAAGGCTTGTCTTTGGCTCTCACATCTCCCCTCCCCCATGGGTTCCTCACAGTTTCT
CTGATACTCTTTGCTGTCTTCTTTCTGACTTCTTTCATCTGTCTGGTTTTTCCCCTCAGG
GAAATTTGTCTAGAAGGCACAGGGAAGCCATCAGAGAAGGTGGGCACTGGGCCTGGGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96ET3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96ET3_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               216-318, + strand, RNAz p=0.651095

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-318, + strand, RNAz p=0.651095

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_030645, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_030645, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr7 (26758933-26759526)
               

               
               1-600, gnl|Hg17|chr1 (245316101-245315446)
               

               
               1-600, gnl|Mm7|chr11 (58427691-58428296)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr7 (26758933-26759526)
               

               
               1-600, gnl|Hg17|chr1 (245316101-245315446)
               

               
               1-600, gnl|Mm7|chr11 (58427691-58428296)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	1-600, gnl\|bosTau2\|chr7 (26758933-26759526)
	1-600, gnl\|Hg17\|chr1 (245316101-245315446)
	1-600, gnl\|Mm7\|chr11 (58427691-58428296)