Ss1.1-Pig1-130A09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGACTCCCCTGAGTTCAAGGAGCAGTTCAAGCTCTGCATCAACCGTGGTCACCGTGGC TTCCGAAGGGCCATCCAGACCAAAGGCATCAAGTTCGAAGTGGTCCACAAAGGGGGGCTG TTCAAGAACGACCGGGTCCTGGGCACAGCCCAGCTGAAGCTGGATGCCCTGGAGACGGCA TGTGAGGTTCGGGAGATCCTTGAGGTCCTGGATGGTCGTAGGCCCACAGGGGGGCGGCTG GAGGTGATGGTGCGGATTCGGGAGCCACTGACAGCCCAGCAGTTGGAGACAACAACGGAG AGGTGGCTGGTCATCGACCCCCTGCCAGCAGCTGTGCCCACACAGGTTGCAGGGCCCAAA GGGAAGGCCCCTCCCATACCTGTTCCTACGAGGGATCCAGGGAACAGCCCGACCCCTGCA TAGTCTCAGCGTGCTGGCCTTTGACCAAGAGCGTCTGGAGCGGAAGATCCTGACCCTCAG GCAGGCACGGCGGCCGGTGCCCCCAGATGTGGCCCAGCAATACCAGGACATCATACAACG CAGCCAGTGGCAGAGGGCACAGCTGGAGCAGGGGGGCCCGGGCATCCGACGGGAGTACAT GGCCCAGCTGGAGCGTCAGCTACAGTTCTACACAGAGGCTGCCCGGCGCCTGGGCAATGA CGGCAGCAGGGAGGCCGCAAAGGAGGCACTATATCGACGGAACCTAGTCGAGAGTGAGCT GCAGCGGCTCCGCAGGTGAGGAGCTGAAGGGGCGGGCAGCCCCCCGGAGAGCATGGAGCA TGCCCAAGGCCCTGGTGCTGGGAGGAGCTAACATGGCCACGACCTCAGACCAGATGAGCA GACAATCAGAGGACAATCGGCTCTGGATGGACACATCCCCTGCCAGGCCCACCCCGCCTG GCTGGAGCCTCCCTGGCAGACGGCACTGGGGATGGTGTCCACCAGCCCATATGTGCCCCT CACCCAGACTTGGCTGGGTGGGCCCCAGAGAGTCCGTTTGCACAGCCCGAGGGTGTGCGG CCCCTTGCCTACCCCTGAGGTGGGAGGGTGGCCAGGACCAAGCCCCAAGGGCCCCTGCAA GCACTTTACTTCCTGCCCCTCCCCAGCCTTAACCCTGAAGCTCACCCACACCCCAAAGAA GCCACTGAGGCCAGCCAGAGCCCGGCTGGCTCCCCCAAGGGTTGCCCTGGCCCAGCTGGG CCCCAAGGGCTGACACACTGAATAAACAGCCCGGGCCACACCTGGCTCAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGACTCCCCTGAGTTCAAGGAGCAGTTCAAGCTCTGCATCAACCGTGGTCACCGTGGC TTCCGAAGGGCCATCCAGACCAAAGGCATCAAGTTCGAAGTGGTCCACAAAGGGGGGCTG TTCAAGAACGACCGGGTCCTGGGCACAGCCCAGCTGAAGCTGGATGCCCTGGAGACGGCA TGTGAGGTTCGGGAGATCCTTGAGGTCCTGGATGGTCGTAGGCCCACAGGGGGGCGGCTG GAGGTGATGGTGCGGATTCGGGAGCCACTGACAGCCCAGCAGTTGGAGACAACAACGGAG AGGTGGCTGGTCATCGACCCCCTGCCAGCAGCTGTGCCCACACAGGTTGCAGGGCCCAAA GGGAAGGCCCCTCCCATACCTGTTCCTACGAGGGATCCAGGGAACAGCCCGACCCCTGCA TAGTCTCAGCGTGCTGGCCTTTGACCAAGAGCGTCTGGAGCGGAAGATCCTGACCCTCAG GCAGGCACGGCGGCCGGTGCCCCCAGATGTGGCCCAGCAATACCAGGACATCATACAACG CAGCCAGTGGCAGAGGGCACAGCTGGAGCAGGGGGGCCCGGGCATCCGACGGGAGTACAT GGCCCAGCTGGAGCGTCAGCTACAGTTCTACACAGAGGCTGCCCGGCGCCTGGGCAATGA CGGCAGCAGGGAGGCCGCAAAGGAGGCACTATATCGACGGAACCTAGTCGAGAGTGAGCT GCAGCGGCTCCGCAGGTGAGGAGCTGAAGGGGCGGGCAGCCCCCCGGAGAGCATGGAGCA TGCCCAAGGCCCTGGTGCTGGGAGGAGCTAACATGGCCACGACCTCAGACCAGATGAGCA GACAATCAGAGGACAATCGGCTCTGGATGGACACATCCCCTGCCAGGCCCACCCCGCCTG GCTGGAGCCTCCCTGGCAGACGGCACTGGGGATGGTGTCCACCAGCCCATATGTGCCCCT CACCCAGACTTGGCTGGGTGGGCCCCAGAGAGTCCGTTTGCACAGCCCGAGGGTGTGCGG CCCCTTGCCTACCCCTGAGGTGGGAGGGTGGCCAGGACCAAGCCCCAAGGGCCCCTGCAA GCACTTTACTTCCTGCCCCTCCCCAGCCTTAACCCTGAAGCTCACCCACACCCCAAAGAA GCCACTGAGGCCAGCCAGAGCCCGGCTGGCTCCCCCAAGGGTTGCCCTGGCCCAGCTGGG CCCCAAGGGCTGACACACTGAATAAACAGCCCGGGCCACACCTGGCTCAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 876-1073, - strand, RNAz p=0.999433 | |
| 1114-1249, - strand, RNAz p=0.998211 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 876-1073, - strand, RNAz p=0.999433 | |
| 1114-1249, - strand, RNAz p=0.998211 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 13-120, gnl|bosTau2|chr7 (7883145-7883037) | |
| 13-120, gnl|canFam2|chr20 (51553164-51553057) | |
| 13-120, gnl|danRer3|chr2 (9780774-9780881) | |
| 13-120, gnl|dasNov1|scaffold_53755 (42236-42343) | |
| 13-120, gnl|echTel1|scaffold_314937 (2968-2861) | |
| 13-120, gnl|fr1|chrUn (148431613-148431506) | |
| 13-120, gnl|hg17|chr19 (13898789-13898896) | |
| 13-120, gnl|Hg17|chr19 (13898790-13898902) | |
| 13-120, gnl|loxAfr1|scaffold_24224 (7024-7131) | |
| 13-120, gnl|mm7|chr8 (82717549-82717442) | |
| 13-120, gnl|Mm7|chr8 (82717546-82717438) | |
| 13-120, gnl|monDom2|scaffold_159 (1182805-1182912) | |
| 13-120, gnl|oryCun1|scaffold_178073 (79235-79342) | |
| 13-120, gnl|panTro1|chr20 (14530617-14530724) | |
| 13-120, gnl|rheMac2|chr19 (13613807-13613914) | |
| 13-120, gnl|rn3|chr19 (25713378-25713485) | |
| 13-120, gnl|tetNig1|chr18 (2080931-2080824) | |
| 13-120, gnl|xenTro1|scaffold_781 (20902-21008) | |
| 203-342, gnl|bosTau2|chr7 (7882187-7882048) | |
| 203-342, gnl|canFam2|chr20 (51552579-51552486) | |
| 203-342, gnl|danRer3|chr2 (9784520-9784611) | |
| 203-342, gnl|dasNov1|scaffold_53755 (43684-43777) | |
| 203-342, gnl|echTel1|scaffold_285473 (1784-1881) | |
| 203-342, gnl|fr1|chrUn (148431198-148431105) | |
| 203-342, gnl|hg17|chr19 (13899702-13899795) | |
| 203-342, gnl|Hg17|chr19 (13899704-13899843) | |
| 203-342, gnl|loxAfr1|scaffold_24224 (8530-8627) | |
| 203-342, gnl|mm7|chr8 (82717149-82717056) | |
| 203-342, gnl|Mm7|chr8 (82717145-82717006) | |
| 203-342, gnl|monDom2|scaffold_159 (1183159-1183252) | |
| 203-342, gnl|panTro1|chr20 (14531520-14531613) | |
| 203-342, gnl|rheMac2|chr19 (13614400-13614493) | |
| 203-342, gnl|rn3|chr19 (25713735-25713828) | |
| 203-342, gnl|tetNig1|chr18 (2080490-2080397) | |
| 203-342, gnl|xenTro1|scaffold_781 (22847-22940) | |
| 465-593, gnl|bosTau2|chr7 (7881167-7881039) | |
| 465-593, gnl|canFam2|chr20 (51551593-51551488) | |
| 465-593, gnl|danRer3|chrNA (89915835-89915943) | |
| 465-593, gnl|echTel1|scaffold_314937 (1442-1332) | |
| 465-593, gnl|hg17|chr19 (13901340-13901451) | |
| 465-593, gnl|Hg17|chr19 (13901345-13901651) | |
| 465-593, gnl|mm7|chr8 (82716283-82716172) | |
| 465-593, gnl|Mm7|chr8 (82716276-82716148) | |
| 465-593, gnl|monDom2|scaffold_159 (1183819-1183930) | |
| 465-593, gnl|panTro1|chr20 (14533171-14533282) | |
| 465-593, gnl|rheMac2|chr19 (13616010-13616121) | |
| 465-593, gnl|rn3|chr19 (25714611-25714722) | |
| 465-593, gnl|xenTro1|scaffold_896 (271590-271716) | |
| 717-1249, gnl|bosTau2|chr7 (7880678-7880168) | |
| 717-1249, gnl|Hg17|chr19 (13902186-13902697) | |
| 717-1249, gnl|Mm7|chr8 (82715643-82715212) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-120, gnl|bosTau2|chr7 (7883145-7883037) | |
| 13-120, gnl|canFam2|chr20 (51553164-51553057) | |
| 13-120, gnl|danRer3|chr2 (9780774-9780881) | |
| 13-120, gnl|dasNov1|scaffold_53755 (42236-42343) | |
| 13-120, gnl|echTel1|scaffold_314937 (2968-2861) | |
| 13-120, gnl|fr1|chrUn (148431613-148431506) | |
| 13-120, gnl|hg17|chr19 (13898789-13898896) | |
| 13-120, gnl|Hg17|chr19 (13898790-13898902) | |
| 13-120, gnl|loxAfr1|scaffold_24224 (7024-7131) | |
| 13-120, gnl|mm7|chr8 (82717549-82717442) | |
| 13-120, gnl|Mm7|chr8 (82717546-82717438) | |
| 13-120, gnl|monDom2|scaffold_159 (1182805-1182912) | |
| 13-120, gnl|oryCun1|scaffold_178073 (79235-79342) | |
| 13-120, gnl|panTro1|chr20 (14530617-14530724) | |
| 13-120, gnl|rheMac2|chr19 (13613807-13613914) | |
| 13-120, gnl|rn3|chr19 (25713378-25713485) | |
| 13-120, gnl|tetNig1|chr18 (2080931-2080824) | |
| 13-120, gnl|xenTro1|scaffold_781 (20902-21008) | |
| 203-342, gnl|bosTau2|chr7 (7882187-7882048) | |
| 203-342, gnl|canFam2|chr20 (51552579-51552486) | |
| 203-342, gnl|danRer3|chr2 (9784520-9784611) | |
| 203-342, gnl|dasNov1|scaffold_53755 (43684-43777) | |
| 203-342, gnl|echTel1|scaffold_285473 (1784-1881) | |
| 203-342, gnl|fr1|chrUn (148431198-148431105) | |
| 203-342, gnl|hg17|chr19 (13899702-13899795) | |
| 203-342, gnl|Hg17|chr19 (13899704-13899843) | |
| 203-342, gnl|loxAfr1|scaffold_24224 (8530-8627) | |
| 203-342, gnl|mm7|chr8 (82717149-82717056) | |
| 203-342, gnl|Mm7|chr8 (82717145-82717006) | |
| 203-342, gnl|monDom2|scaffold_159 (1183159-1183252) | |
| 203-342, gnl|panTro1|chr20 (14531520-14531613) | |
| 203-342, gnl|rheMac2|chr19 (13614400-13614493) | |
| 203-342, gnl|rn3|chr19 (25713735-25713828) | |
| 203-342, gnl|tetNig1|chr18 (2080490-2080397) | |
| 203-342, gnl|xenTro1|scaffold_781 (22847-22940) | |
| 465-593, gnl|bosTau2|chr7 (7881167-7881039) | |
| 465-593, gnl|canFam2|chr20 (51551593-51551488) | |
| 465-593, gnl|danRer3|chrNA (89915835-89915943) | |
| 465-593, gnl|echTel1|scaffold_314937 (1442-1332) | |
| 465-593, gnl|hg17|chr19 (13901340-13901451) | |
| 465-593, gnl|Hg17|chr19 (13901345-13901651) | |
| 465-593, gnl|mm7|chr8 (82716283-82716172) | |
| 465-593, gnl|Mm7|chr8 (82716276-82716148) | |
| 465-593, gnl|monDom2|scaffold_159 (1183819-1183930) | |
| 465-593, gnl|panTro1|chr20 (14533171-14533282) | |
| 465-593, gnl|rheMac2|chr19 (13616010-13616121) | |
| 465-593, gnl|rn3|chr19 (25714611-25714722) | |
| 465-593, gnl|xenTro1|scaffold_896 (271590-271716) | |
| 717-1249, gnl|bosTau2|chr7 (7880678-7880168) | |
| 717-1249, gnl|Hg17|chr19 (13902186-13902697) | |
| 717-1249, gnl|Mm7|chr8 (82715643-82715212) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| jej (0.197844) | |
| nje (0.16592) | |
| csp (0.161186) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.197844) | |
| nje (0.16592) | |
| csp (0.161186) | |
| eje (0.0988338) |