Non-Coding RNA Search

Ss1.1-Pig1-130C06.5

Sequence:


               
               AATTAAATCCATTTCATCTAAAAGTAGTCATGAAGTTTTAAGACAACGGTAAAAACTGGT
GGAAGGATGGTCGTTTCCAGTCTGAATGGGTTGGTCCTTGTGTTATAGACTATATTACAG
AAAATGGATGTGCTGTTCTGAGAGACAACACTGGGACTAGACTTAAAAGACCTATCAAAA
TGTCCCATCTCAAGCCCTATGTAAGAGAATCCAGTGAACAAGACAGTCTTTATCTCTTAC
AAGGTTCAGTCGTGGCAGATCATGACTACATTGGATTGCCTGAAATTCCAGTTGGAGCAT
ACCAAGCAAATATTCTGGTAGAAGATGCAACTATTGGAATAGTCGATAATGAATTACTGA
CATCAAGCAAAGATCGTGAACTTTTAGAATATAGAAATGCCAAAATCTCTCCATTGATAG
AAGATCATAGTACCCTTGAAAAGCAGACTTTTAGTCTGTTGGACTCTTCAAACCAAGTCC
TTGAGTACTTGAGTTAGTAAACACCAAAATTCACTTCAAGTGTTTATTTAGAAAATGTAT
CTCCTTGAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTAAATCCATTTCATCTAAAAGTAGTCATGAAGTTTTAAGACAACGGTAAAAACTGGT
GGAAGGATGGTCGTTTCCAGTCTGAATGGGTTGGTCCTTGTGTTATAGACTATATTACAG
AAAATGGATGTGCTGTTCTGAGAGACAACACTGGGACTAGACTTAAAAGACCTATCAAAA
TGTCCCATCTCAAGCCCTATGTAAGAGAATCCAGTGAACAAGACAGTCTTTATCTCTTAC
AAGGTTCAGTCGTGGCAGATCATGACTACATTGGATTGCCTGAAATTCCAGTTGGAGCAT
ACCAAGCAAATATTCTGGTAGAAGATGCAACTATTGGAATAGTCGATAATGAATTACTGA
CATCAAGCAAAGATCGTGAACTTTTAGAATATAGAAATGCCAAAATCTCTCCATTGATAG
AAGATCATAGTACCCTTGAAAAGCAGACTTTTAGTCTGTTGGACTCTTCAAACCAAGTCC
TTGAGTACTTGAGTTAGTAAACACCAAAATTCACTTCAAGTGTTTATTTAGAAAATGTAT
CTCCTTGAATCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884973|ref|XP_607767.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884973|ref|XP_607767.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-552, gnl|bosTau2|chr15 (26711738-26712288)
               

               
               1-552, gnl|Hg17|chr5 (102460365-102451449)
               

               
               1-552, gnl|Mm7|chr1 (97638233-97644821)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr15 (26711738-26712288)
               

               
               1-552, gnl|Hg17|chr5 (102460365-102451449)
               

               
               1-552, gnl|Mm7|chr1 (97638233-97644821)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tra (0.246184)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               sug (0.127291)

	1-552, gnl\|bosTau2\|chr15 (26711738-26712288)
	1-552, gnl\|Hg17\|chr5 (102460365-102451449)
	1-552, gnl\|Mm7\|chr1 (97638233-97644821)