Non-Coding RNA Search

Ss1.1-Pig1-130D01.5

Sequence:


               
               GGTAAAGGGCGACCTGTCTGTGGCCATGAAGCTGGAGGCTGTCCTCAGGGCCTTGAAGTA
GCAGGCTTGGCTGACTGGCCACAGCCCAGCCCCGAGCCTAGCACCAAGCCAGGGGGGCGT
CTTGGAGGAGGATGCATTGGCATTGCACCTTGGATTATTGACAAGTTTCAGGCCCAGCAG
GAGCCAAGGAGTGGAGCTGGGAGACACAGGAGACTGGGAGAGGTCGGGTCAGGCAGCCCT
GCCCCTCTTACCCACTTGGTTCTTTGGACAAGCCTTTGCTGATCCTGGTCCCCTGCCAAG
TGCCCAGCGTAAACTGGGCACACAACACCATGACAGGAGAGCCAGGCCTGCTCGGGCCTG
CTGGCCACCTGACTGGAGAGATAGGGGTGACAGAAACAGCCTGACAGCAGCTGGTTTGGT
CTCAATGTGAGGGAGCAATGCATGTGGCTCGGGCCCCTGGCTCCAGAGCAGGGGTTGGAG
AGGCTGGGGGAGGGGGAGGGAGAGGGGAGGTGGCCACCCAGAGGAGGTTCCCTGCAGTGG
CAGGGAGCTGGGGACCAGACTGGCCCACCTTGCTGATTGCAGACTAGCCCCAGGCTAGCC
CAAGGGATGAGGGGGACAAGAAAGAGTGGGGCCTGCGCCTCCTGGCCCTGCTCCTGAAGA
TGCCTTGTCTCATCTCCAGCTCTTGTCTTGCATGCCTTAGGGGCCAGGGCCCAGGGCAGC
ATGCAGGAGAGCCCTGCCCTTTTCTGTGCTTCCTCCCAGAGGTTTGAAACCCTCAAATAA
ATATGGTGTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAAAGGGCGACCTGTCTGTGGCCATGAAGCTGGAGGCTGTCCTCAGGGCCTTGAAGTA
GCAGGCTTGGCTGACTGGCCACAGCCCAGCCCCGAGCCTAGCACCAAGCCAGGGGGGCGT
CTTGGAGGAGGATGCATTGGCATTGCACCTTGGATTATTGACAAGTTTCAGGCCCAGCAG
GAGCCAAGGAGTGGAGCTGGGAGACACAGGAGACTGGGAGAGGTCGGGTCAGGCAGCCCT
GCCCCTCTTACCCACTTGGTTCTTTGGACAAGCCTTTGCTGATCCTGGTCCCCTGCCAAG
TGCCCAGCGTAAACTGGGCACACAACACCATGACAGGAGAGCCAGGCCTGCTCGGGCCTG
CTGGCCACCTGACTGGAGAGATAGGGGTGACAGAAACAGCCTGACAGCAGCTGGTTTGGT
CTCAATGTGAGGGAGCAATGCATGTGGCTCGGGCCCCTGGCTCCAGAGCAGGGGTTGGAG
AGGCTGGGGGAGGGGGAGGGAGAGGGGAGGTGGCCACCCAGAGGAGGTTCCCTGCAGTGG
CAGGGAGCTGGGGACCAGACTGGCCCACCTTGCTGATTGCAGACTAGCCCCAGGCTAGCC
CAAGGGATGAGGGGGACAAGAAAGAGTGGGGCCTGCGCCTCCTGGCCCTGCTCCTGAAGA
TGCCTTGTCTCATCTCCAGCTCTTGTCTTGCATGCCTTAGGGGCCAGGGCCCAGGGCAGC
ATGCAGGAGAGCCCTGCCCTTTTCTGTGCTTCCTCCCAGAGGTTTGAAACCCTCAAATAA
ATATGGTGTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               596-711, + strand, RNAz p=0.577173

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               596-711, + strand, RNAz p=0.577173

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               603-722, + strand, RNAmicro p=0.967027

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               603-722, + strand, RNAmicro p=0.967027

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR595587, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR595587, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-711, gnl|bosTau2|chr21 (23958700-23957978)
               

               
               1-711, gnl|Hg17|chr15 (72063391-72062702)
               

               
               1-711, gnl|Mm7|chr9 (58290695-58291349)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-711, gnl|bosTau2|chr21 (23958700-23957978)
               

               
               1-711, gnl|Hg17|chr15 (72063391-72062702)
               

               
               1-711, gnl|Mm7|chr9 (58290695-58291349)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               eje (0.0988338)

	1-711, gnl\|bosTau2\|chr21 (23958700-23957978)
	1-711, gnl\|Hg17\|chr15 (72063391-72062702)
	1-711, gnl\|Mm7\|chr9 (58290695-58291349)