Ss1.1-Pig1-130N22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGAATATAAAAATGCCCACGGCAAGGATCATCATTCTGTATGATGACGACGAGAGGCTG GCCAGCCAAGCAGCCACCACCATGTGTGAGCGGGGATTTGAAAACCTCTTCATGCTTTCT GGAGGTCTAAAAGTCTTAGCTCAGAAATTCCCAGAAGGACTGATTACGGGTTCCCTGCCA GCATCTTGCCAGCAGGCCCTTCCTCCTGGTTCTGCCCGGAAGCGATCCAGCCCCAAAGTG CCGCTTCCACCAGCTGAGAATAAATGGAGGTTTACCCCAGAAGACCTAAAGAAGATAGAG TATTACCTGGAAGAGGATCAGGGTCATTCAGACAATCCTAGCCGGCTAAGCCAAGCTAAT GCTTCTGGAAGAGACTCCAAGGTTCCAGGCGCTCGCAGCAGTCAGAACTTGCCCACCAGC GGCTCAAACCCCCGCTCACTGGGCAGTGGCCATGTGCAAGGCAAACCCTGGAAGTAAAGA TTTTGTCTGTTTTAGTCAAATAAATGTTTTCTCTCCTTTCAGAACCCCTGAGTAGTTCCC AAGTTGGTCATTTTCAGAAACTGCTGCAAAGGAAAGACCTCAACATGTGTGATAGAGGCT CTCTTCCTCTCTCCAGCTCGTTTCCACCTCCTCTCCCACATCCAAATTGGGAAGGATTTT TTACAAAAACCAGAGGCATGACAGGCTCTAGTGTCCTCCCTGTTGTTTATAGAATATTTA AGTCTCTGAAACTGATAGGAAAAAAACTGTCTAATTTTTTTAGGCTTTCATTTTTTTAAT AAGGTCCAGCTTGTTTGGGTCTATGTCCTGCATTGTTTTGTAAATACTTCAGGCACATCT GGTGTGCCCATCCCAGCTACTTCTTTTTCACTCAGTGTTCTCAGTTTCATGAAGGTTCTG CAGGTAGGCTTTGCAGTCCAAGAATCTGTCCCTGGGGTGCATATGATCTGAGTTTGCAGC TGCCCCCAGCCCCCCACCCCCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGAATATAAAAATGCCCACGGCAAGGATCATCATTCTGTATGATGACGACGAGAGGCTG GCCAGCCAAGCAGCCACCACCATGTGTGAGCGGGGATTTGAAAACCTCTTCATGCTTTCT GGAGGTCTAAAAGTCTTAGCTCAGAAATTCCCAGAAGGACTGATTACGGGTTCCCTGCCA GCATCTTGCCAGCAGGCCCTTCCTCCTGGTTCTGCCCGGAAGCGATCCAGCCCCAAAGTG CCGCTTCCACCAGCTGAGAATAAATGGAGGTTTACCCCAGAAGACCTAAAGAAGATAGAG TATTACCTGGAAGAGGATCAGGGTCATTCAGACAATCCTAGCCGGCTAAGCCAAGCTAAT GCTTCTGGAAGAGACTCCAAGGTTCCAGGCGCTCGCAGCAGTCAGAACTTGCCCACCAGC GGCTCAAACCCCCGCTCACTGGGCAGTGGCCATGTGCAAGGCAAACCCTGGAAGTAAAGA TTTTGTCTGTTTTAGTCAAATAAATGTTTTCTCTCCTTTCAGAACCCCTGAGTAGTTCCC AAGTTGGTCATTTTCAGAAACTGCTGCAAAGGAAAGACCTCAACATGTGTGATAGAGGCT CTCTTCCTCTCTCCAGCTCGTTTCCACCTCCTCTCCCACATCCAAATTGGGAAGGATTTT TTACAAAAACCAGAGGCATGACAGGCTCTAGTGTCCTCCCTGTTGTTTATAGAATATTTA AGTCTCTGAAACTGATAGGAAAAAAACTGTCTAATTTTTTTAGGCTTTCATTTTTTTAAT AAGGTCCAGCTTGTTTGGGTCTATGTCCTGCATTGTTTTGTAAATACTTCAGGCACATCT GGTGTGCCCATCCCAGCTACTTCTTTTTCACTCAGTGTTCTCAGTTTCATGAAGGTTCTG CAGGTAGGCTTTGCAGTCCAAGAATCTGTCCCTGGGGTGCATATGATCTGAGTTTGCAGC TGCCCCCAGCCCCCCACCCCCATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 615-718, - strand, RNAz p=0.54742 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 615-718, - strand, RNAz p=0.54742 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC056162, - |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 6-126, gnl|bosTau2|chr4 (50697151-50697270) | |
| 6-126, gnl|canFam2|chr14 (9503594-9503440) | |
| 6-126, gnl|danRer3|chrUn (167190280-167190430) | |
| 6-126, gnl|dasNov1|scaffold_3310 (15557-15712) | |
| 6-126, gnl|echTel1|scaffold_312905 (84199-84046) | |
| 6-126, gnl|galGal2|chr14 (14850738-14850886) | |
| 6-126, gnl|hg17|chr7 (129634490-129634645) | |
| 6-126, gnl|Hg17|chr7 (129634616-129634497) | |
| 6-126, gnl|loxAfr1|scaffold_31177 (12688-12533) | |
| 6-126, gnl|mm7|chr6 (30589435-30589585) | |
| 6-126, gnl|Mm7|chr6 (30589560-30589442) | |
| 6-126, gnl|monDom2|scaffold_22 (14028663-14028515) | |
| 6-126, gnl|oryCun1|scaffold_166228 (7876-7722) | |
| 6-126, gnl|panTro1|chr6 (132107834-132107989) | |
| 6-126, gnl|rheMac2|chr3 (167785151-167785305) | |
| 6-126, gnl|rn3|chr4 (57843349-57843499) | |
| 6-126, gnl|tetNig1|chr13 (10590139-10590016) | |
| 6-126, gnl|xenTro1|scaffold_20 (2583791-2583643) | |
| 336-947, gnl|bosTau2|chr4 (50698875-50699480) | |
| 336-947, gnl|canFam2|chr14 (9505675-9504853) | |
| 336-947, gnl|dasNov1|scaffold_3310 (13302-14266) | |
| 336-947, gnl|echTel1|scaffold_312905 (86728-85902) | |
| 336-947, gnl|hg17|chr7 (129631951-129632923) | |
| 336-947, gnl|Hg17|chr7 (129632836-129632196) | |
| 336-947, gnl|loxAfr1|scaffold_31177 (15117-14178) | |
| 336-947, gnl|mm7|chr6 (30587171-30588095) | |
| 336-947, gnl|Mm7|chr6 (30588001-30587393) | |
| 336-947, gnl|monDom2|scaffold_22 (14030836-14029893) | |
| 336-947, gnl|oryCun1|scaffold_166228 (9949-9077) | |
| 336-947, gnl|panTro1|chr6 (132105292-132106250) | |
| 336-947, gnl|rheMac2|chr3 (167782634-167783604) | |
| 336-947, gnl|rn3|chr4 (57841078-57842072) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-126, gnl|bosTau2|chr4 (50697151-50697270) | |
| 6-126, gnl|canFam2|chr14 (9503594-9503440) | |
| 6-126, gnl|danRer3|chrUn (167190280-167190430) | |
| 6-126, gnl|dasNov1|scaffold_3310 (15557-15712) | |
| 6-126, gnl|echTel1|scaffold_312905 (84199-84046) | |
| 6-126, gnl|galGal2|chr14 (14850738-14850886) | |
| 6-126, gnl|hg17|chr7 (129634490-129634645) | |
| 6-126, gnl|Hg17|chr7 (129634616-129634497) | |
| 6-126, gnl|loxAfr1|scaffold_31177 (12688-12533) | |
| 6-126, gnl|mm7|chr6 (30589435-30589585) | |
| 6-126, gnl|Mm7|chr6 (30589560-30589442) | |
| 6-126, gnl|monDom2|scaffold_22 (14028663-14028515) | |
| 6-126, gnl|oryCun1|scaffold_166228 (7876-7722) | |
| 6-126, gnl|panTro1|chr6 (132107834-132107989) | |
| 6-126, gnl|rheMac2|chr3 (167785151-167785305) | |
| 6-126, gnl|rn3|chr4 (57843349-57843499) | |
| 6-126, gnl|tetNig1|chr13 (10590139-10590016) | |
| 6-126, gnl|xenTro1|scaffold_20 (2583791-2583643) | |
| 336-947, gnl|bosTau2|chr4 (50698875-50699480) | |
| 336-947, gnl|canFam2|chr14 (9505675-9504853) | |
| 336-947, gnl|dasNov1|scaffold_3310 (13302-14266) | |
| 336-947, gnl|echTel1|scaffold_312905 (86728-85902) | |
| 336-947, gnl|hg17|chr7 (129631951-129632923) | |
| 336-947, gnl|Hg17|chr7 (129632836-129632196) | |
| 336-947, gnl|loxAfr1|scaffold_31177 (15117-14178) | |
| 336-947, gnl|mm7|chr6 (30587171-30588095) | |
| 336-947, gnl|Mm7|chr6 (30588001-30587393) | |
| 336-947, gnl|monDom2|scaffold_22 (14030836-14029893) | |
| 336-947, gnl|oryCun1|scaffold_166228 (9949-9077) | |
| 336-947, gnl|panTro1|chr6 (132105292-132106250) | |
| 336-947, gnl|rheMac2|chr3 (167782634-167783604) | |
| 336-947, gnl|rn3|chr4 (57841078-57842072) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) |