Non-Coding RNA Search

Ss1.1-Pig1-131A22.5

Sequence:


               
               GAAACTGTGAACCAGAAGGAGAAAAGTGGCCCCAGCGGGAGTGGAGGCAGCAGCGGGGAC
CCCGACAGCTTCTTCAACTCGAAGGTGGCGTGGTTTGCAGCCGTAGGCGCTGGCTGTGTC
ATCTTCCTGCTCATAATCATCTTCCTGACCGTCCTGCTACTGAAGCTACGCAAGCGGCAC
CGCAAGCACACGCAGCAGCGGGCGCCCGCCCTCTCGCTCAGCACCCTGGCCAGTCCCAAG
GGGGGCAGTGGCACGGCGGGCACCGAGCCCAGCGACATCATCATCCCCTTACGGACTACA
GAGAACAACTACTGCCCCCACTATGAGAAGGTGAGTGGAGACTACGGGCACCCCGTCTAC
ATCGTCCAGGAGATGCCGCCCCAGAGTCCAGCGAACATCTACTACAAGGTCTGAGGGCCC
GGGCGGCCTCGGCCCCGAGGGACAGTTGGCCGGGACTGCACCTCTCCTTCCTCACCCATG
CCCCTCCCCTTGCCAGCTGTGCCCACCTTTGTATTTAGTTTTGTAGTTTCTTGGCTTTTA
TAATCCCCCTTTTGCCCTGCCCCCTGGGCTTTGGAGGGGGGTGCTTGTGCCCCTAGCCCC
CATGCTCTTGTGCCTTCCCCCTCTGGCCAGGCCTCTGGGCTCTGCGGGGGCACCCCTTCT
TGGAGGGCAGGGTCTGATGCTGATGGACAGCAAGCAGGGAGTCGCCCCCCCATGGCCCTG
CCCCCCTCCTCGCCCCGTTTCTCCCTTCCCAGGACTGCCTGTCCACTATCATCACTGTTT
TTAATGTTTTTGCGTTCATTTTTTAGCTGTCAATTCATTTCCATCTGGTGTTTTTTTTTT
TTTTTTGAAGAAAAATGGAAAAATGGAAAAGGCAGCCCCTCCCCAGCTTTTCTGAGCCCG
GCTGACCCCAATATAAGGGGCCTGGGGCAGGATGTGGCCAGCCAGGAAGTACAGGATGGC
ATTTCTTTTATAAACTCCTTGACATTTGTTGGGTGGCGGGGTGGGCCAGGGCTGTTCTTG
CCCACGAGGGAAGACGAGAGTGCCACTGGACAAGGTGTCTCACCCTTCCCCCACTGACCC
TCCTTCTTCAGTGCTGATCTTGGCAAATGGGGTAGTGGCTGCCATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACTGTGAACCAGAAGGAGAAAAGTGGCCCCAGCGGGAGTGGAGGCAGCAGCGGGGAC
CCCGACAGCTTCTTCAACTCGAAGGTGGCGTGGTTTGCAGCCGTAGGCGCTGGCTGTGTC
ATCTTCCTGCTCATAATCATCTTCCTGACCGTCCTGCTACTGAAGCTACGCAAGCGGCAC
CGCAAGCACACGCAGCAGCGGGCGCCCGCCCTCTCGCTCAGCACCCTGGCCAGTCCCAAG
GGGGGCAGTGGCACGGCGGGCACCGAGCCCAGCGACATCATCATCCCCTTACGGACTACA
GAGAACAACTACTGCCCCCACTATGAGAAGGTGAGTGGAGACTACGGGCACCCCGTCTAC
ATCGTCCAGGAGATGCCGCCCCAGAGTCCAGCGAACATCTACTACAAGGTCTGAGGGCCC
GGGCGGCCTCGGCCCCGAGGGACAGTTGGCCGGGACTGCACCTCTCCTTCCTCACCCATG
CCCCTCCCCTTGCCAGCTGTGCCCACCTTTGTATTTAGTTTTGTAGTTTCTTGGCTTTTA
TAATCCCCCTTTTGCCCTGCCCCCTGGGCTTTGGAGGGGGGTGCTTGTGCCCCTAGCCCC
CATGCTCTTGTGCCTTCCCCCTCTGGCCAGGCCTCTGGGCTCTGCGGGGGCACCCCTTCT
TGGAGGGCAGGGTCTGATGCTGATGGACAGCAAGCAGGGAGTCGCCCCCCCATGGCCCTG
CCCCCCTCCTCGCCCCGTTTCTCCCTTCCCAGGACTGCCTGTCCACTATCATCACTGTTT
TTAATGTTTTTGCGTTCATTTTTTAGCTGTCAATTCATTTCCATCTGGTGTTTTTTTTTT
TTTTTTGAAGAAAAATGGAAAAATGGAAAAGGCAGCCCCTCCCCAGCTTTTCTGAGCCCG
GCTGACCCCAATATAAGGGGCCTGGGGCAGGATGTGGCCAGCCAGGAAGTACAGGATGGC
ATTTCTTTTATAAACTCCTTGACATTTGTTGGGTGGCGGGGTGGGCCAGGGCTGTTCTTG
CCCACGAGGGAAGACGAGAGTGCCACTGGACAAGGTGTCTCACCCTTCCCCCACTGACCC
TCCTTCTTCAGTGCTGATCTTGGCAAATGGGGTAGTGGCTGCCATCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47226240|emb|CAG08387.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47226240|emb|CAG08387.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               200-319, - strand, RNAz p=0.628098
               

               
               400-515, - strand, RNAz p=0.718485
               

               
               636-1095, - strand, RNAz p=0.998442

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, - strand, RNAz p=0.628098
               

               
               400-515, - strand, RNAz p=0.718485
               

               
               636-1095, - strand, RNAz p=0.998442

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1128, gnl|bosTau2|chr2 (49658567-49659695)
               

               
               1-1128, gnl|Hg17|chrX (67843105-67844219)
               

               
               1-1128, gnl|Mm7|chrX (94474469-94475577)
               


               
               80-447, gnl|bosTau2|chr12 (45201084-45200716)
               

               
               80-447, gnl|Hg17|chr13 (105943722-105943348)
               

               
               80-447, gnl|Mm7|chr8 (8590806-8590442)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1128, gnl|bosTau2|chr2 (49658567-49659695)
               

               
               1-1128, gnl|Hg17|chrX (67843105-67844219)
               

               
               1-1128, gnl|Mm7|chrX (94474469-94475577)
               


               
               80-447, gnl|bosTau2|chr12 (45201084-45200716)
               

               
               80-447, gnl|Hg17|chr13 (105943722-105943348)
               

               
               80-447, gnl|Mm7|chr8 (8590806-8590442)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               cty (0.10408)

	200-319, - strand, RNAz p=0.628098
	400-515, - strand, RNAz p=0.718485
	636-1095, - strand, RNAz p=0.998442

	1-1128, gnl\|bosTau2\|chr2 (49658567-49659695)
	1-1128, gnl\|Hg17\|chrX (67843105-67844219)
	1-1128, gnl\|Mm7\|chrX (94474469-94475577)

	80-447, gnl\|bosTau2\|chr12 (45201084-45200716)
	80-447, gnl\|Hg17\|chr13 (105943722-105943348)
	80-447, gnl\|Mm7\|chr8 (8590806-8590442)