Non-Coding RNA Search

Ss1.1-Pig1-131D08.5

Sequence:


               
               AGATGGATCCAGTGGCCAGCAGCTGCATGAGGGGCCCCCACCCCCCAGCCCCGGTCTGGG
GCTGCCTTCGAAACCCCCACTCAGAAGGCAGCGGGGCCTCAGGGCTCCCCCACTACCCGC
CGACCCCGTTCTCCTTCCACCAGAAACCAGACTTCACAGCGACAGCGACGACAGCGTACC
CTGACTTCTCGGCCTCCTGCCTGGCGGCCACCCCGCACAGCCTGCCCCAGGAGGAGCGCC
TCTTCACTGAGCAGCACCCCGCCTTCCCACAACCCCCTGACTGGCCCTTCCCTGTCTCGG
AGGCCCGGCGGAGGCTCAACCCAGGCCCGGCGGGGGGCTCCAAGGAGATGGGGGCCCGCA
GCCCAGGCCTGGTGGACACCACGGGTGGCCCGGGCGAGGACTACGAGGTCCTTGGGAGCA
GTGCCAATGAGACGGAGAAGAAGTCAACCAGACGGAAAAAGGAGAGTTCAGACAATCAGG
AGAACCGAGGAAAGCCAGAGGCCGGCAGCAAGGCTCGCAAGGAGCGGACGGCCTTCACCA
AGGAGCAACTTCGGGAGCTGGAGGCTGAATTTGCTCATCACAACTACCTGACCCGGCTCC
GGAGATATGAGATCGCCGTGAACCTGGACCTCTCCGAGCGTCAGGTCAAAGTGTGGTTCC
AGAACCGAAGGATGAAGTGGAAGCGTGTGAAGGGCGGTCAGCCCATCTCCCCGCAGGGGC
AGGACCCCGAGGATGGGGACTCTGCCACTTCTCCAAGTTCAGAGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGGATCCAGTGGCCAGCAGCTGCATGAGGGGCCCCCACCCCCCAGCCCCGGTCTGGG
GCTGCCTTCGAAACCCCCACTCAGAAGGCAGCGGGGCCTCAGGGCTCCCCCACTACCCGC
CGACCCCGTTCTCCTTCCACCAGAAACCAGACTTCACAGCGACAGCGACGACAGCGTACC
CTGACTTCTCGGCCTCCTGCCTGGCGGCCACCCCGCACAGCCTGCCCCAGGAGGAGCGCC
TCTTCACTGAGCAGCACCCCGCCTTCCCACAACCCCCTGACTGGCCCTTCCCTGTCTCGG
AGGCCCGGCGGAGGCTCAACCCAGGCCCGGCGGGGGGCTCCAAGGAGATGGGGGCCCGCA
GCCCAGGCCTGGTGGACACCACGGGTGGCCCGGGCGAGGACTACGAGGTCCTTGGGAGCA
GTGCCAATGAGACGGAGAAGAAGTCAACCAGACGGAAAAAGGAGAGTTCAGACAATCAGG
AGAACCGAGGAAAGCCAGAGGCCGGCAGCAAGGCTCGCAAGGAGCGGACGGCCTTCACCA
AGGAGCAACTTCGGGAGCTGGAGGCTGAATTTGCTCATCACAACTACCTGACCCGGCTCC
GGAGATATGAGATCGCCGTGAACCTGGACCTCTCCGAGCGTCAGGTCAAAGTGTGGTTCC
AGAACCGAAGGATGAAGTGGAAGCGTGTGAAGGGCGGTCAGCCCATCTCCCCGCAGGGGC
AGGACCCCGAGGATGGGGACTCTGCCACTTCTCCAAGTTCAGAGTGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               MEOX1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               MEOX1_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-159, - strand, RNAz p=0.962664
               

               
               320-439, + strand, RNAz p=0.556386
               

               
               651-768, + strand, RNAz p=0.668986

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.962664
               

               
               320-439, + strand, RNAz p=0.556386
               

               
               651-768, + strand, RNAz p=0.668986

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_013999, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_013999, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-471, gnl|bosTau2|chr19 (38552973-38553443)
               

               
               1-471, gnl|Hg17|chr17 (39094430-39093960)
               

               
               1-471, gnl|Mm7|chr11 (102003046-102002582)
               


               
               641-768, gnl|bosTau2|chr19 (38569289-38569416)
               

               
               641-768, gnl|canFam2|chr9 (22958247-22958121)
               

               
               641-768, gnl|danRer3|chr12 (26991602-26991476)
               

               
               641-768, gnl|echTel1|scaffold_303109 (13845-13970)
               

               
               641-768, gnl|fr1|chrUn (120681319-120681445)
               

               
               641-768, gnl|galGal2|chr27 (2141179-2141302)
               

               
               641-768, gnl|hg17|chr17 (39074804-39074930)
               

               
               641-768, gnl|Hg17|chr17 (39074930-39074803)
               

               
               641-768, gnl|loxAfr1|scaffold_56811 (4051-3925)
               

               
               641-768, gnl|mm7|chr11 (101987646-101987772)
               

               
               641-768, gnl|Mm7|chr11 (101987772-101987645)
               

               
               641-768, gnl|monDom2|scaffold_18 (54046535-54046661)
               

               
               641-768, gnl|oryCun1|scaffold_210350 (92750-92624)
               

               
               641-768, gnl|panTro1|chr19 (42257793-42257919)
               

               
               641-768, gnl|rheMac2|chr16 (53663187-53663313)
               

               
               641-768, gnl|rn3|chr10 (90937068-90937194)
               

               
               641-768, gnl|tetNig1|chr2 (1169042-1168916)
               

               
               641-768, gnl|xenTro1|scaffold_23 (3004142-3004015)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-471, gnl|bosTau2|chr19 (38552973-38553443)
               

               
               1-471, gnl|Hg17|chr17 (39094430-39093960)
               

               
               1-471, gnl|Mm7|chr11 (102003046-102002582)
               


               
               641-768, gnl|bosTau2|chr19 (38569289-38569416)
               

               
               641-768, gnl|canFam2|chr9 (22958247-22958121)
               

               
               641-768, gnl|danRer3|chr12 (26991602-26991476)
               

               
               641-768, gnl|echTel1|scaffold_303109 (13845-13970)
               

               
               641-768, gnl|fr1|chrUn (120681319-120681445)
               

               
               641-768, gnl|galGal2|chr27 (2141179-2141302)
               

               
               641-768, gnl|hg17|chr17 (39074804-39074930)
               

               
               641-768, gnl|Hg17|chr17 (39074930-39074803)
               

               
               641-768, gnl|loxAfr1|scaffold_56811 (4051-3925)
               

               
               641-768, gnl|mm7|chr11 (101987646-101987772)
               

               
               641-768, gnl|Mm7|chr11 (101987772-101987645)
               

               
               641-768, gnl|monDom2|scaffold_18 (54046535-54046661)
               

               
               641-768, gnl|oryCun1|scaffold_210350 (92750-92624)
               

               
               641-768, gnl|panTro1|chr19 (42257793-42257919)
               

               
               641-768, gnl|rheMac2|chr16 (53663187-53663313)
               

               
               641-768, gnl|rn3|chr10 (90937068-90937194)
               

               
               641-768, gnl|tetNig1|chr2 (1169042-1168916)
               

               
               641-768, gnl|xenTro1|scaffold_23 (3004142-3004015)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	1-159, - strand, RNAz p=0.962664
	320-439, + strand, RNAz p=0.556386
	651-768, + strand, RNAz p=0.668986

	1-471, gnl\|bosTau2\|chr19 (38552973-38553443)
	1-471, gnl\|Hg17\|chr17 (39094430-39093960)
	1-471, gnl\|Mm7\|chr11 (102003046-102002582)

	641-768, gnl\|bosTau2\|chr19 (38569289-38569416)
	641-768, gnl\|canFam2\|chr9 (22958247-22958121)
	641-768, gnl\|danRer3\|chr12 (26991602-26991476)
	641-768, gnl\|echTel1\|scaffold_303109 (13845-13970)
	641-768, gnl\|fr1\|chrUn (120681319-120681445)
	641-768, gnl\|galGal2\|chr27 (2141179-2141302)
	641-768, gnl\|hg17\|chr17 (39074804-39074930)
	641-768, gnl\|Hg17\|chr17 (39074930-39074803)
	641-768, gnl\|loxAfr1\|scaffold_56811 (4051-3925)
	641-768, gnl\|mm7\|chr11 (101987646-101987772)
	641-768, gnl\|Mm7\|chr11 (101987772-101987645)
	641-768, gnl\|monDom2\|scaffold_18 (54046535-54046661)
	641-768, gnl\|oryCun1\|scaffold_210350 (92750-92624)
	641-768, gnl\|panTro1\|chr19 (42257793-42257919)
	641-768, gnl\|rheMac2\|chr16 (53663187-53663313)
	641-768, gnl\|rn3\|chr10 (90937068-90937194)
	641-768, gnl\|tetNig1\|chr2 (1169042-1168916)
	641-768, gnl\|xenTro1\|scaffold_23 (3004142-3004015)