Non-Coding RNA Search

Ss1.1-Pig1-131G21.5

Sequence:


               
               TTTCACCAAGTCCGAGATGCAGATCCACTCCAAGTCGCACACAGAGGCCAAGCCCCACAA
GTGCCCGCACTGCTCCAAGTCCTTTGCCAACGCCTCCTACCTGGCCCAGCACCTGCGCAT
CCACCTGGGCGTCAAGCCCTACCACTGCTCCTACTGTGATAAGTCCTTCCGACAGCTCTC
CCACCTCCAACAGCACACCAGAATCCACACAGGCGACAGACCCTACAAGTGCCCACATCC
TGGCTGCGAAAAGGCTTTCACTCAGCTCTCCAACCTCCAGTCTCACCAGCGCCAGCACAA
CAAGGACAAGCCCTACAAGTGTCCCAACTGCTACCGGGCCTACTCGGACTCAGCCTCCCT
GCAGATCCACCTCTCAGCCCACGCCATCAAGCACGCCAAGGCCTACTGCTGCAGCATGTG
CGGGCGGGCCTACACCTCGGAGACCTACCTGATGAAGCACATGTCCAAACACACGGTGGT
GGAGCACCTGGTGAGCCATCACTCACCCCAGAGGACGGAGTCCCCCGGCATCCCGGTGCG
AATTTCCCTCATCTGAGCCCACCCAAGGCGCCGCCCCGCCCTGCCCACTGGCAGACATAG
ACCCAGGCAGCACCTAGGCCCCGGCTCCCTCCAGGGGCCCTACAGGAACAGCGGAGCTCT
CTCATGACCTTCCTGACCTTCCAGAAGGCCTGGGCCGCAGAAGCCCTGCCCGGTCCAGCT
CTGGGGGCGGCCAGGCCAACTGCAAGATTCTGGACTCTTTTGGTGGCATCCAAAGACGAT
CTCAGAGCACTTTGAACCTCTCTGCTGGGTTTTCCTTTTGTTCCCTTCACTTGGCTTCAC
TGTTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTAAGTTTGTTTTGGAAATAACAAAAA
AGATATTTATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCACCAAGTCCGAGATGCAGATCCACTCCAAGTCGCACACAGAGGCCAAGCCCCACAA
GTGCCCGCACTGCTCCAAGTCCTTTGCCAACGCCTCCTACCTGGCCCAGCACCTGCGCAT
CCACCTGGGCGTCAAGCCCTACCACTGCTCCTACTGTGATAAGTCCTTCCGACAGCTCTC
CCACCTCCAACAGCACACCAGAATCCACACAGGCGACAGACCCTACAAGTGCCCACATCC
TGGCTGCGAAAAGGCTTTCACTCAGCTCTCCAACCTCCAGTCTCACCAGCGCCAGCACAA
CAAGGACAAGCCCTACAAGTGTCCCAACTGCTACCGGGCCTACTCGGACTCAGCCTCCCT
GCAGATCCACCTCTCAGCCCACGCCATCAAGCACGCCAAGGCCTACTGCTGCAGCATGTG
CGGGCGGGCCTACACCTCGGAGACCTACCTGATGAAGCACATGTCCAAACACACGGTGGT
GGAGCACCTGGTGAGCCATCACTCACCCCAGAGGACGGAGTCCCCCGGCATCCCGGTGCG
AATTTCCCTCATCTGAGCCCACCCAAGGCGCCGCCCCGCCCTGCCCACTGGCAGACATAG
ACCCAGGCAGCACCTAGGCCCCGGCTCCCTCCAGGGGCCCTACAGGAACAGCGGAGCTCT
CTCATGACCTTCCTGACCTTCCAGAAGGCCTGGGCCGCAGAAGCCCTGCCCGGTCCAGCT
CTGGGGGCGGCCAGGCCAACTGCAAGATTCTGGACTCTTTTGGTGGCATCCAAAGACGAT
CTCAGAGCACTTTGAACCTCTCTGCTGGGTTTTCCTTTTGTTCCCTTCACTTGGCTTCAC
TGTTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTAAGTTTGTTTTGGAAATAACAAAAA
AGATATTTATTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47206350|emb|CAG13278.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47206350|emb|CAG13278.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               50-247, - strand, RNAz p=0.897963

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-247, - strand, RNAz p=0.897963

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               38-485, gnl|bosTau2|chr21 (12659244-12659679)
               


               
               50-476, gnl|bosTau2|chr14 (433815-434229)
               

               
               50-476, gnl|Hg17|chr8 (144429759-144430173)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-485, gnl|bosTau2|chr21 (12659244-12659679)
               


               
               50-476, gnl|bosTau2|chr14 (433815-434229)
               

               
               50-476, gnl|Hg17|chr8 (144429759-144430173)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	38-485, gnl\|bosTau2\|chr21 (12659244-12659679)

	50-476, gnl\|bosTau2\|chr14 (433815-434229)
	50-476, gnl\|Hg17\|chr8 (144429759-144430173)